DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and AT4G25410

DIOPT Version :9

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001320062.1 Gene:AT4G25410 / 828644 AraportID:AT4G25410 Length:221 Species:Arabidopsis thaliana


Alignment Length:162 Identity:37/162 - (22%)
Similarity:66/162 - (40%) Gaps:44/162 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 RKYTPRGMALTR-CSESVSSLSPGSSPAPYNVDQSQSVQRRNAR--ERNRVKQVNNSFARLRQHI 126
            :...|:|....| .|.:..|...|.|...:..|.::..::...|  ||.|.:::...||.||.|:
plant     5 KNLNPKGYQRQRPFSSAGESGGSGGSGTAHETDDNKKKKKLLHRDIERQRRQEMATLFATLRTHL 69

  Fly   127 PQSIITDLTKGGGRGPHKKISKVDTLRIAVEYIR----RLQDLV---DDLN-------------- 170
            |...|    ||       |.:..|.:..||.:|:    |:::|.   |:|:              
plant    70 PLKYI----KG-------KRAVSDHVNGAVNFIKDTEARIKELSARRDELSRETGQGYKSNPDPG 123

  Fly   171 -GGSNIGANNA--------VTQLQLCLDESSS 193
             .||::|.:..        |:.|::.:..:||
plant   124 KTGSDVGKSEPATVMVQPHVSGLEVVVSSNSS 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 HLH 105..163 CDD:278439 19/63 (30%)
AT4G25410NP_001320062.1 bHLH_AtORG2_like 47..119 CDD:381484 22/82 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13935
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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