DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and AT4G20970

DIOPT Version :9

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_193829.2 Gene:AT4G20970 / 827844 AraportID:AT4G20970 Length:190 Species:Arabidopsis thaliana


Alignment Length:232 Identity:49/232 - (21%)
Similarity:88/232 - (37%) Gaps:59/232 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 PAPYNVDQSQSVQRRNARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVDTLRI 154
            |:..|..||:||.|:.. |:||..|:.:.::.|...:|....|:           .::..|.|..
plant     3 PSHSNTGQSRSVDRKTV-EKNRRMQMKSLYSELISLLPHHSSTE-----------PLTLPDQLDE 55

  Fly   155 AVEYIRRLQDLVDDLNGGS-NIGANNAVTQLQLCLDESSSHSSSSSTCSSSGHNTYYQNTISVSP 218
            |..||::||..|:...... |:.|...:.:|         :|..||:.|||         :.||.
plant    56 AANYIKKLQVNVEKKRERKRNLVATTTLEKL---------NSVGSSSVSSS---------VDVSV 102

  Fly   219 LQQQQQLQRQQ----FNHQPLTALS----------LNTNLVGTSVPGGDAGCVSTSKNQQTCHSP 269
            .::..:::.|:    |:...:|:|.          :.|..:|..:.......|..:. ..|.|..
plant   103 PRKLPKIEIQETGSIFHIFLVTSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAV-FHTLHCK 166

  Fly   270 TSSFNSSMSFDSGTYEGVPQQISTHLDRLDHLDNELH 306
            ..      ..|.|....:|       :||:.:.|.:|
plant   167 VE------EHDYGARSQIP-------ERLEKIVNSVH 190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 HLH 105..163 CDD:278439 12/57 (21%)
AT4G20970NP_193829.2 bHLH_AtORG2_like 12..87 CDD:381484 21/95 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13935
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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