DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and mespa

DIOPT Version :9

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001039184.1 Gene:mespa / 734031 XenbaseID:XB-GENE-920825 Length:310 Species:Xenopus tropicalis


Alignment Length:313 Identity:63/313 - (20%)
Similarity:108/313 - (34%) Gaps:104/313 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 SESVSSLSPGSS------PAPY--------------------------NVDQSQSVQRRN----- 105
            ||...||||.||      ..||                          ..|.|....:||     
 Frog    30 SEGYCSLSPASSIDSSGFSPPYPSCAFANEAYGSIHTAFTQMEKLKSKPQDTSTKKDQRNRKVYD 94

  Fly   106 -------ARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGP-HKKISKVDTLRIAVEYIRRL 162
                   .||:.|::.::::...||:::|.::          .| .|.::|::|||:.:.||..|
 Frog    95 RVRNSASEREKMRMRNLSSALQNLRRYLPPAV----------APIGKTLTKIETLRLTIRYISHL 149

  Fly   163 QDLV-----------DDLNGGSNIGANNAVTQLQLCLDESSSHSSSSSTCSSSGHNT---YYQNT 213
            .:::           ::....||      :..:.||..:...|:..|.....|....   |:.::
 Frog   150 SEVLGLDEETLIKRREEEMRRSN------MCHIGLCCCQDRQHNLCSEARPHSSETVNLPYFSSS 208

  Fly   214 ISVSPLQQQQQLQRQQFNHQPLTALSLNTNLVGTSVPGGDAGCVSTSKNQQTC---HSPTSSFNS 275
            ..:.|.|...:.|.|:|......|         |.....|.|  ...|:..:|   ..|.:|.::
 Frog   209 PRLFPEQNILEAQEQEFQQPARWA---------TDGKASDLG--DHMKSFSSCALASEPVNSIDT 262

  Fly   276 SMSFDSGTYEGVPQQISTHLDR------LDHLDNELHTHSQLQLKFEPYEHFQ 322
            ...|.      :|..||.  |:      :|.:.:||. ...|...|:|.|..|
 Frog   263 KEDFT------IPSPISP--DQGFCQNFIDDMWDELQ-QKDLWTSFQPPETVQ 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 HLH 105..163 CDD:278439 15/70 (21%)
mespaNP_001039184.1 bHLH_SF 97..160 CDD:381792 15/72 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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