DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and Ascl1

DIOPT Version :10

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_071779.1 Gene:Ascl1 / 64186 RGDID:71010 Length:233 Species:Rattus norvegicus


Alignment Length:193 Identity:65/193 - (33%)
Similarity:95/193 - (49%) Gaps:31/193 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 QHIMPAPSPLI---PGGNQNQPAGTMPIKTRKYTPRGMALTRCSESVSSLSPGSSPAPYNVDQSQ 99
            |...|..||:.   |.|..::.|.....:.|..:|.   |.||...::....|     |::.|.|
  Rat    57 QQQAPQLSPVADGQPSGGGHKSAAKQVKRQRSSSPE---LMRCKRRLNFSGFG-----YSLPQQQ 113

  Fly   100 --SVQRRNARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVDTLRIAVEYIRRL 162
              :|.|||.|||||||.||..||.||:|:|..           ..:||:|||:|||.||||||.|
  Rat   114 PAAVARRNERERNRVKLVNLGFATLREHVPNG-----------AANKKMSKVETLRSAVEYIRAL 167

  Fly   163 QDLVDDLNGGSNIGANNAVTQL-QLCLDESSSHSSSSSTCSSSGHNTYYQNTISVSPLQQQQQ 224
            |.|:|:.:      |.:|..|. .|....|.::|:..::.:.|..::|..:..|..||..::|
  Rat   168 QQLLDEHD------AVSAAFQAGVLSPTISPNYSNDLNSMAGSPVSSYSSDEGSYDPLSPEEQ 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 bHLH_TS_dAS-C_like 100..166 CDD:381587 35/65 (54%)
Ascl1NP_071779.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 39..95 10/40 (25%)
bHLH_TS_ASCL1_Mash1 112..182 CDD:381585 40/86 (47%)
Blue background indicates that the domain is not in the aligned region.

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