DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and Atoh1

DIOPT Version :10

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001102708.1 Gene:Atoh1 / 500156 RGDID:1565171 Length:351 Species:Rattus norvegicus


Alignment Length:318 Identity:72/318 - (22%)
Similarity:107/318 - (33%) Gaps:119/318 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 GGNQNQPAGTMPIKTRKYTPR---GMALTR--CSESVSSLSPGSSPAPYNVDQSQSVQRR---NA 106
            ||....|.   |:|.|:...:   |:.:..  ||..       .:|:...|:..|. |||   ||
  Rat   110 GGLSKSPG---PVKVREQLCKLKGGVVVDELGCSRQ-------RAPSSKQVNGVQK-QRRLAANA 163

  Fly   107 RERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVDTLRIAVEYIRRLQDLVD---- 167
            |||.|:..:|::|.:||..|| |...|          ||:||.:||::|..||..|.:|:.    
  Rat   164 RERRRMHGLNHAFDQLRNVIP-SFNND----------KKLSKYETLQMAQIYINALSELLQTPSV 217

  Fly   168 ----------------------DLNGGSNIGANNAVTQLQLC-------LDESSSHSSSSSTCSS 203
                                  ...||:  || :||...|..       ....:..:..|:..||
  Rat   218 GEQPPPPAASCKNDHHHLRAAASYEGGA--GA-SAVAGAQPAPGGGPRPTPPGACRTRFSTPASS 279

  Fly   204 SGHNTYYQNTISVSPLQQQQQLQRQQFNHQPLTALSLNTNLVGTSVPGGDAGCVSTSKNQQTCHS 268
            .|::.            |...|....|..:.|||:....:| ..|:||                 
  Rat   280 GGYSV------------QLDALHFPAFEDRALTAMMAQKDL-SPSLPG----------------- 314

  Fly   269 PTSSFNSSMSFDSGTYEGVPQQISTHLDRLDHLDNELHTHSQLQLKFEPYEHFQLDEE 326
                         |..:.||:..|....|....|.|          |.|:.|:...:|
  Rat   315 -------------GILQPVPEDSSKTSPRSHRSDGE----------FSPHSHYSDSDE 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 bHLH_TS_dAS-C_like 100..166 CDD:381587 27/68 (40%)
Atoh1NP_001102708.1 bHLH_TS_ATOH1 152..215 CDD:381556 29/74 (39%)

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