DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and Fer2

DIOPT Version :9

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001287359.1 Gene:Fer2 / 41961 FlyBaseID:FBgn0038402 Length:283 Species:Drosophila melanogaster


Alignment Length:272 Identity:61/272 - (22%)
Similarity:103/272 - (37%) Gaps:88/272 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 NNNNTTKSTTMSSSVLSTNETFPTTINSATKIFRYQHIMPAPSPLIPGGNQNQPAGTMPIKTRKY 67
            :..|...|:|....|.::....|...||             ||....||.... ||:.       
  Fly    79 SGENLLDSSTNPMGVHNSGGGAPLMCNS-------------PSASSSGGGCGN-AGSA------- 122

  Fly    68 TPRGMALTRCSESVSSLSPGSSPAPYNVDQSQSVQRR--NARERNRVKQ----------VNNSFA 120
            ||.|         ....:||..........|..:||:  |.|||.|:::          :|::|.
  Fly   123 TPGG---------AGGPNPGYGSVGAATASSYKMQRQAANVRERKRIQRSAPTGYTKCSINSAFD 178

  Fly   121 RLRQHIPQSIITDLTKGGGRGPH-KKISKVDTLRIAVEYIRRLQDLVDDLNGGSNIGANNAVTQL 184
            .||.|:|..            |: |::||:||||:|:.||..|::::..        ..:.:|.:
  Fly   179 ELRVHVPTF------------PYEKRLSKIDTLRLAIAYISLLREVLQT--------DYDPLTYV 223

  Fly   185 QLCL-----DESSSHSSSSSTCSSSGHNTYYQNTISVSPLQQQQQLQRQQFNHQPLTALSLNTNL 244
            :.||     .:.::.::|..|...|..|  ::| :.|.|.::                 :|.|:|
  Fly   224 EKCLRGEIKADRANWNTSDLTARLSWIN--WEN-LGVHPGRR-----------------TLLTSL 268

  Fly   245 VGTSVPGGDAGC 256
            ..:|.|...|.|
  Fly   269 ALSSEPMCGAHC 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 HLH 105..163 CDD:278439 22/68 (32%)
Fer2NP_001287359.1 HLH 148..210 CDD:278439 24/73 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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