Protein Alignment sc and HLH54F

DIOPT Version :10

• Sequence 1: NP_476803.1
• Gene: sc / 30982
• FlyBaseID: FBgn0004170
• Length: 345
• Species: Drosophila melanogaster
• Sequence 2: NP_477302.1
• Gene: HLH54F / 37027
• FlyBaseID: FBgn0022740
• Length: 242
• Species: Drosophila melanogaster
• Alignment Length: 295
• Identity: 71/295 - (24%)
• Similarity: 106/295 - (35%)
• Gaps: 96/295 - (32%)

  Fly    60 MPIKTRKYTPRGMALTRCSESVSSLSPGSSPAPYNVDQSQSVQRR--NARERNRVKQVNNSFARL 122
            ||.|.|..:|.........|..||.|  |.|         .|||.  |||||.|::.:::::.||
  Fly     1 MPRKKRSSSPTEFFDDDFDEDASSQS--SQP---------PVQRNAANARERMRMRVLSSAYGRL 54

  Fly   123 RQHIPQSIITDLTKGGGRGPHKKISKVDTLRIAVEYIRRLQDLVDDLNGGSNIGANNAVTQLQLC 187
            :..:|..           .|..|:||:||||:|..||::|...|
  Fly    55 KTKLPNI-----------PPDTKLSKLDTLRLATLYIKQLITAV--------------------- 87

  Fly   188 LDESSSHSSSSSTCSSSGHNTYYQNTISVSPLQQQQQLQRQQFNHQPLTALS---LNTNLVGTSV 249
              |:.|||.:    ....||                  |....||...:..|   |:|:.:..|.
  Fly    88 --ETGSHSQN----HPHNHN------------------QHHSLNHSHSSTTSSEGLDTSHMADSS 128

  Fly   250 PGGDAGCVST-----------SKNQQTCHSPTSSFNSSMSFDSGTY--EGVPQQI--STHL--DR 297
            .||:....:.           ..::....:|:||..||...|..|.  :..|:..  .||:  |.
  Fly   129 GGGNYNFHNNGHGMSWPFEFHQSSRSLAFAPSSSTTSSARMDWQTLHTQSYPKTTRGETHVSADL 193

  Fly   298 LDHLDNELHTHSQLQLKFEPYEHFQLD-EEDCTPD 331
            ..|...|.|:|      :.|.|..|:: ...|:.|
  Fly   194 SYHQLPESHSH------WYPAEVHQMEPAASCSYD 222

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sc	NP_476803.1	bHLH_TS_dAS-C_like	100..166	CDD:381587	24/67 (36%)
HLH54F	NP_477302.1	bHLH_TS_musculin_like	32..87	CDD:381429	23/65 (35%)