DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sc and Ferd3l

DIOPT Version :10

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001102450.1 Gene:Ferd3l / 366598 RGDID:1311812 Length:166 Species:Rattus norvegicus


Alignment Length:65 Identity:20/65 - (30%)
Similarity:36/65 - (55%) Gaps:11/65 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 QRRNARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVDTLRIAVEYIRRLQDLV 166
            |..|.|||.|:..:|.:|.:||:.:|....           .|::|:::|||:|:.||..:.:|:
  Rat   104 QAANIRERKRMFNLNEAFDQLRRKVPTFAY-----------EKRLSRIETLRLAIVYISFMTELL 157

  Fly   167  166
              Rat   158  157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 bHLH_TS_dAS-C_like 100..166 CDD:381587 19/63 (30%)
Ferd3lNP_001102450.1 bHLH_TS_FERD3L_NATO3 94..157 CDD:381421 19/63 (30%)

Return to query results.
Submit another query.