DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and Hand

DIOPT Version :9

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_609370.2 Gene:Hand / 34379 FlyBaseID:FBgn0032209 Length:174 Species:Drosophila melanogaster


Alignment Length:78 Identity:28/78 - (35%)
Similarity:46/78 - (58%) Gaps:17/78 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 VQRRNA---RERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVDTLRIAVEYIRRL 162
            |::||.   :||.|.:.:||:|:.||:.|| ::.||          .|:||:.||::|:.||..|
  Fly    57 VKKRNTANKKERRRTQSINNAFSYLREKIP-NVPTD----------TKLSKIKTLKLAILYINYL 110

  Fly   163 QDLVD---DLNGG 172
            .:::|   |..||
  Fly   111 VNVLDGDLDPKGG 123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 HLH 105..163 CDD:278439 21/60 (35%)
HandNP_609370.2 HLH 59..110 CDD:278439 22/61 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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