DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and Tal1

DIOPT Version :9

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001101428.2 Gene:Tal1 / 313507 RGDID:1306748 Length:329 Species:Rattus norvegicus


Alignment Length:318 Identity:76/318 - (23%)
Similarity:106/318 - (33%) Gaps:135/318 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 TKIFRYQHIMPAPSPL-----IPG-GNQNQ--------PAGTMPIKTRKYTPRGMALTRCSESVS 82
            |::.|.....|||:|.     :|| |...|        |||          |....|...|:.::
  Rat    91 TELCRPPGPAPAPAPASAPAELPGDGRMVQLSPPALAAPAG----------PGRALLYSLSQPLA 145

  Fly    83 SLSPG------------------SSPAPYNVDQSQ----SVQRR---NARERNRVKQVNNSFARL 122
            ||..|                  ..|:||.::.:.    .|.||   |:|||.|.:.||.:||.|
  Rat   146 SLGSGFFGEPDAFPMFTNNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAEL 210

  Fly   123 RQHIPQSIITDLTKGGGRGPHKKISKVDTLRIAVEYIRRLQDLVDDLNGGSNIGANNAVTQLQLC 187
            |:.||.           ..|.||:||.:.||:|::||..|..|::|                   
  Rat   211 RKLIPT-----------HPPDKKLSKNEILRLAMKYINFLAKLLND------------------- 245

  Fly   188 LDESSSHSSSSSTCSSSGHNTYYQNTISVSPLQQQQQLQRQQFNHQPLTALSLNTNLVGTSVPGG 252
                                            |:::..||.:....|         :||.. .||
  Rat   246 --------------------------------QEEEGTQRAKPGKDP---------MVGAG-GGG 268

  Fly   253 DAGCVSTSKNQQTCHSPTSSFNSSM----SFDSGTYEGVPQQISTHLDRLDHLDNELH 306
            ..|.:......|...||.||..||:    |.||.|.|..|:          |....||
  Rat   269 AGGGIPPEDLLQDVLSPNSSCGSSLDGAASPDSYTEEPTPK----------HTPRSLH 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 HLH 105..163 CDD:278439 23/57 (40%)
Tal1NP_001101428.2 bHLH_TS_TAL1 185..249 CDD:381549 30/125 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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