DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and Tcf15

DIOPT Version :9

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001162051.1 Gene:Tcf15 / 296272 RGDID:1308464 Length:195 Species:Rattus norvegicus


Alignment Length:108 Identity:33/108 - (30%)
Similarity:46/108 - (42%) Gaps:29/108 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 CSESVSSLSPGSSP----------APYNVDQSQSVQRRNARERNRVKQVNNSFARLRQHIPQSII 131
            |.|.:.:...|..|          .|..|.:.:  |..|||||:|.:.||.:|..||..||...:
  Rat    40 CCEGLEAARRGPGPGSGRRASGGAGPVVVVRQR--QAANARERDRTQSVNTAFTALRTLIPTEPV 102

  Fly   132 TDLTKGGGRGPHKKISKVDTLRIAVEYIRRLQ------DLVDD 168
                       .:|:||::|||:|..||..|.      |..||
  Rat   103 -----------DRKLSKIETLRLASSYIAHLANVLLLGDAADD 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 HLH 105..163 CDD:278439 22/57 (39%)
Tcf15NP_001162051.1 bHLH_TS_TCF15_paraxis 64..129 CDD:381476 26/77 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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