DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and hlh-10

DIOPT Version :9

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_505401.2 Gene:hlh-10 / 191402 WormBaseID:WBGene00001954 Length:202 Species:Caenorhabditis elegans


Alignment Length:195 Identity:46/195 - (23%)
Similarity:80/195 - (41%) Gaps:56/195 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 MSSSVLSTNETFPTTINSA----TKIFRYQHIMPAPSPLIPGGNQN----------QPAGTMPIK 63
            |.||.::|::..|..:::.    :::...|.||...........||          :.:.:.|..
 Worm     1 MESSSMTTHQEEPLDLSTGNHGNSELSDEQQIMQVMESCGMFLQQNLFAWFLQSMLEASASQPQL 65

  Fly    64 TRKYTPRGMA----LTRCSESVSSLSPGSSPAPYNVDQSQSVQRR-------------------- 104
            |:...|....    |.:.::|..:....|:|:|     :|:.:||                    
 Worm    66 TQDEPPENDTKENDLVKQNKSEVNDENESTPSP-----TQNSRRRTSTGKIDRRMVGKMCTRRYE 125

  Fly   105 -NARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVDTLRIAVEYIRRLQDLVDD 168
             ||||||||:|::..|.:||..:|   |.|         ..||||:.||::|..||..|..::.:
 Worm   126 ANARERNRVQQLSKMFDQLRVCLP---IED---------DAKISKLATLKVASSYIGYLGAILQE 178

  Fly   169  168
             Worm   179  178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 HLH 105..163 CDD:278439 24/57 (42%)
hlh-10NP_505401.2 bHLH_SF 121..179 CDD:381792 25/70 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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