DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and lyl1

DIOPT Version :9

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:XP_009300341.1 Gene:lyl1 / 100333113 ZFINID:ZDB-GENE-090807-1 Length:326 Species:Danio rerio


Alignment Length:284 Identity:66/284 - (23%)
Similarity:108/284 - (38%) Gaps:82/284 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 SSSVLSTNETFPTTINSATKIFRYQHIMPAPSPLIPGGNQNQPAGTMPIKTRKY----TPRGMA- 73
            |||..|::...|....:.::.......:||..|:|...:...|...:|:....:    .|.|.| 
Zfish    65 SSSSSSSSSRSPHCTTTDSRRGSSSASLPAHIPVISLAHSKPPLPPLPLLAALHPAPPPPHGPAE 129

  Fly    74 --------LTRCSESVSSLSP---------GSS----PAPYNVDQSQSVQRR------------- 104
                    ||..|.:.:.|.|         .||    ||.:.:..:..::||             
Zfish   130 LRLAQLSCLTGSSPAAALLPPAFLQTHPFISSSFLMPPAGFGIFSNARMKRRPSTHFEVEIRSDG 194

  Fly   105 -----------NARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVDTLRIAVEY 158
                       |:|||.|.:.||.:|:.||:.||.           ..|.:|:||.:.||:|::|
Zfish   195 PPQKLARRVFTNSRERWRQQNVNGAFSELRKLIPT-----------HPPDRKLSKNEILRLAMKY 248

  Fly   159 IRRLQDLVDDLN----GGSNIGANNAVTQLQLCLDESSSHSSSSSTCS--SSGHNTYYQNTISVS 217
            |..|:.|::|.:    .|....|:...|...|.|..||..|....|.|  |:|     ....|..
Zfish   249 IDFLEQLLNDQSQPEETGQRAHAHTPSTHSLLLLTASSGSSCYGDTDSEESTG-----PRACSTD 308

  Fly   218 PLQQQQQLQRQQFNHQPLTALSLN 241
            |          :.:.:|:.||:::
Zfish   309 P----------KHSREPILALTVS 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 HLH 105..163 CDD:278439 21/57 (37%)
lyl1XP_009300341.1 HLH 206..256 CDD:197674 22/60 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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