DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and tal1

DIOPT Version :9

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001135468.1 Gene:tal1 / 100196924 XenbaseID:XB-GENE-479827 Length:388 Species:Xenopus tropicalis


Alignment Length:203 Identity:56/203 - (27%)
Similarity:85/203 - (41%) Gaps:61/203 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 MPAPSPLIPGGN-------QNQPAGTMPIKTRKYTPRGMALTRCSESVSSLSPG----------- 87
            :|.||...|...       |..|..::|::....|    .|...:::::|.:.|           
 Frog   170 IPLPSTGPPAEQAVEARMVQLSPTASLPLQAAGRT----MLYGLNQTLASGNSGYFDDPEAYPMF 230

  Fly    88 -------SSPAPYNVDQSQSVQRR-------NARERNRVKQVNNSFARLRQHIPQSIITDLTKGG 138
                   ..|.||.|:.|:..|.:       |:|||.|.:.||.:||.||:.||.          
 Frog   231 TNNSRVKRRPGPYEVEISEGPQTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPT---------- 285

  Fly   139 GRGPHKKISKVDTLRIAVEYIRRLQDLVDD-------LNGGSNIGANNAVTQLQLCLDESSSHSS 196
             ..|.||:||.:.||:|::||..|..|:||       .|.|:.   :|.:.|.:|..|..|.:||
 Frog   286 -HPPDKKLSKNEILRLAMKYINFLAKLLDDQEEEGNQRNKGNK---DNGMVQQELLQDMLSPNSS 346

  Fly   197 SSSTCSSS 204
                |.||
 Frog   347 ----CGSS 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 HLH 105..163 CDD:278439 23/57 (40%)
tal1NP_001135468.1 PHA03247 <6..195 CDD:223021 6/24 (25%)
bHLH_TS_TAL1 254..318 CDD:381549 27/74 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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