DRSC/TRiP Functional Genomics Resources

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Protein Alignment sc and scxa

DIOPT Version :9

Sequence 1:NP_476803.1 Gene:sc / 30982 FlyBaseID:FBgn0004170 Length:345 Species:Drosophila melanogaster
Sequence 2:NP_001076538.2 Gene:scxa / 100034489 ZFINID:ZDB-GENE-060503-414 Length:204 Species:Danio rerio


Alignment Length:233 Identity:53/233 - (22%)
Similarity:78/233 - (33%) Gaps:99/233 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 IMPAPSPLIPGGNQNQPAGTMPIKTRKYTPRGMALTRCSESVSSLSPGSSPAPYNVDQS------ 98
            :.||||                    :|....:::....:...|.|.||....:::|.|      
Zfish     7 VRPAPS--------------------RYVYSDISMMSEDDENGSESSGSDDRSFHLDTSGYDLKV 51

  Fly    99 -----------------------------QSVQRR---NARERNRVKQVNNSFARLRQHIPQSII 131
                                         ..:::|   |||||:|...||.:|..||..||    
Zfish    52 GRKRKSSVGGGGRLIGVTPTIPTGTIGHVPEIRQRNAANARERDRTNSVNTAFTALRTLIP---- 112

  Fly   132 TDLTKGGGRGPHKKISKVDTLRIAVEYIRRLQDLVDDLNGGSNIGANNAVTQLQLCLDESSSHSS 196
               |:...|    |:||::|||:|..||             |::|  |.:...:.|.|....||.
Zfish   113 ---TEPADR----KLSKIETLRLASSYI-------------SHLG--NVLLVGEACGDGQPCHSG 155

  Fly   197 SSSTCSSSGHNTYYQNTISVSPLQQQQQLQRQQFNHQP 234
            ..||      :.||.:..|.|         |...|.||
Zfish   156 GPST------SNYYHHHGSPS---------RDSENSQP 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scNP_476803.1 HLH 105..163 CDD:278439 24/57 (42%)
scxaNP_001076538.2 HLH 85..136 CDD:278439 26/74 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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