DRSC/TRiP Functional Genomics Resources

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Protein Alignment ac and msgn1

DIOPT Version :9

Sequence 1:NP_476824.1 Gene:ac / 30981 FlyBaseID:FBgn0000022 Length:201 Species:Drosophila melanogaster
Sequence 2:NP_001039104.1 Gene:msgn1 / 733924 XenbaseID:XB-GENE-972085 Length:172 Species:Xenopus tropicalis


Alignment Length:88 Identity:25/88 - (28%)
Similarity:38/88 - (43%) Gaps:17/88 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 NDDEESSSAFNGPSVI---RRNA--RERNRVKQVNNGFSQLRQHIPAAVIADLSNGRRGIGPGAN 71
            |.|.......:.||:.   ||.|  ||:.|::.:......||.::|..    .|.||        
 Frog    91 NGDLTKKDHGHKPSMTVQRRRKASEREKLRMRAIAEALHTLRNNLPPM----YSQGR-------- 143

  Fly    72 KKLSKVSTLKMAVEYIRRLQKVL 94
            :.|:|:.|||..:.||..|..:|
 Frog   144 QPLTKIQTLKCTINYISELTNLL 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acNP_476824.1 HLH 30..96 CDD:197674 19/67 (28%)
msgn1NP_001039104.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..69
bHLH_TS_Msgn1 102..167 CDD:381509 23/77 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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