DRSC/TRiP Functional Genomics Resources

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Protein Alignment ac and ptf1a

DIOPT Version :9

Sequence 1:NP_476824.1 Gene:ac / 30981 FlyBaseID:FBgn0000022 Length:201 Species:Drosophila melanogaster
Sequence 2:NP_997524.1 Gene:ptf1a / 368662 ZFINID:ZDB-GENE-030616-579 Length:265 Species:Danio rerio


Alignment Length:190 Identity:43/190 - (22%)
Similarity:67/190 - (35%) Gaps:69/190 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 NARERNRVKQVNNGFSQLRQHIPAAVIADLSNGRRGIGPGANKKLSKVSTLKMAVEYIRRLQKVL 94
            |.|||.|::.:|:.|..||.|||....              .|:||||.||::|:.||..|.:::
Zfish   121 NVRERRRMQSINDAFEGLRSHIPTLPY--------------EKRLSKVDTLRLAIGYINFLAELV 171

  Fly    95 HENDQQKQKQLHLQQQHLHFQQQQQ-----HQ-------------------HLYAWHQELQLQSP 135
                   |..:.::..|.....|.:     |:                   |..:|..|.||:..
Zfish   172 -------QSDMPIRNPHSDALNQPKKVIICHRGTRSPSPNDPDYGLPPLAGHSLSWTDEKQLKDQ 229

  Fly   136 TGSTSSCNSISSYCKPATSTIPGATPPNNFHTKLEASFEDYRNNSCSSGTEDEDILDYIS 195
                   |.|      .|:.:.....|...|.|           |..:..|:|...::||
Zfish   230 -------NII------RTAKVWTPEDPRKLHLK-----------SSINNIENEPPFNFIS 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acNP_476824.1 HLH 30..96 CDD:197674 23/65 (35%)
ptf1aNP_997524.1 HLH 121..173 CDD:197674 23/72 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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