DRSC/TRiP Functional Genomics Resources

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Protein Alignment y and yellow-c

DIOPT Version :9

Sequence 1:NP_476792.1 Gene:y / 30980 FlyBaseID:FBgn0004034 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001285947.1 Gene:yellow-c / 34879 FlyBaseID:FBgn0041713 Length:438 Species:Drosophila melanogaster


Alignment Length:419 Identity:169/419 - (40%)
Similarity:252/419 - (60%) Gaps:35/419 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 AAYKLQERYSWSQLDFAFPNTRLKDQALASGDYIPQNALPVGVEHFGNRLFVTVPRWRDGIPATL 85
            |:.||:|::||.||.|.:|....:.:|.::|.||.:|.||:|||.:.||:|||||||:.|:.|||
  Fly    23 ASAKLEEKFSWKQLAFDWPTPEAEAEAKSNGHYIVENNLPLGVERWQNRIFVTVPRWKAGVAATL 87

  Fly    86 TYINMDRSLTGSPELIPYPDWRSN----------------------TAGDCA------NSITTAY 122
            .||::: |...||:|.|||.|.:|                      .|.|..      :::.:.:
  Fly    88 NYIDIN-STEKSPKLHPYPSWEANKLPIDVQPQDQKTPSGGRLDADKAQDAGIQLKDNSTVISTF 151

  Fly   123 RIKVDECGRLWVLDTGTVGIGNTTTNPCPYAVNVFDLTTDTRIRRYELPGVDTNPNTFIANIAVD 187
            ||:||.|.||||||||...|..:.....|.::.||||.|||.:||:.:|...|..::|.|||.||
  Fly   152 RIQVDVCDRLWVLDTGLADILGSPKQITPNSILVFDLKTDTLLRRFTIPADQTKEDSFFANIVVD 216

  Fly   188 IGKN-CDDAYAYFADELGYGLIAYSWELNKSWRFSAHSYFFPDPLRGDFNVAGINFQWGEEGIFG 251
            ..:: |.||:||..|...||:|.||...:||:|.. |::|..|||.|||||.|:|||| .:|:||
  Fly   217 ADRSECQDAFAYIPDLGAYGVIVYSLRNDKSYRVK-HNFFHFDPLHGDFNVGGVNFQW-TDGVFG 279

  Fly   252 MSLSPIRSDGYRTLYFSPLASHRQFAVSTRILRDETRTE--DSYHDFVALDERGPNSHTTSRVMS 314
            :::.|:..|..:.:||..|||.::|.||.|:|::|:...  |||:||..:.:||.|..:|:.|..
  Fly   280 LAVGPMNPDHSKDIYFHALASTKEFKVSNRVLQNESHVTAGDSYYDFKYVGDRGMNGQSTAEVFD 344

  Fly   315 -DDGIELFNLIDQNAVGCWHSSMPYSPQFHGIVDRDDVGLVFPADVKIDENKNVWVLSDRMPVFL 378
             :.|:..:..::::|:.||:...||:|...|::|.|...||||.|:|||....:|||||:||.:|
  Fly   345 PETGVIFYTQVNKDAIACWNIKRPYTPDTQGLIDSDSHTLVFPNDMKIDNEGTIWVLSDKMPTYL 409

  Fly   379 LSDLDYSDTNFRIYTAPLATLIENTVCDL 407
            ..:||.|..|:||.......||:.|.|::
  Fly   410 YKELDPSAVNYRILMGQNRDLIKGTPCEM 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
yNP_476792.1 MRJP 119..405 CDD:308585 122/289 (42%)
yellow-cNP_001285947.1 MRJP 148..436 CDD:281074 122/289 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45449204
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3386
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D23419at7147
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10009
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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