DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cin and Gphn

DIOPT Version :9

Sequence 1:NP_477030.1 Gene:cin / 30973 FlyBaseID:FBgn0000316 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_038968821.1 Gene:Gphn / 64845 RGDID:69194 Length:855 Species:Rattus norvegicus


Alignment Length:849 Identity:247/849 - (29%)
Similarity:363/849 - (42%) Gaps:271/849 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ITFGVLTISDTCWQEPEKDTSGPILRQLIGE--TFANTQVIGNIVPDEKDIIQQELRKWIDREEL 66
            |..||||:||:|::...:|.||..|:.|:.:  ....|.....|||||.:.|::.|..|.|.:||
  Rat    15 IRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKEL 79

  Fly    67 RVILTTGGTGFAPRDVTPE-------------ATRQLLEKECPQLSMYITLESIKQTQYAALSRG 118
            .:|||||||||||||||||             ||::::|:|.|.:::.:.:.|:..|....|||.
  Rat    80 NLILTTGGTGFAPRDVTPEKFPTFPFCGLQKGATKEVIEREAPGMALAMLMGSLNVTPLGMLSRP 144

  Fly   119 LCGIAGNTLILNLPGSEKAVKECFQTISALLPHAVHLIGDDVSLVRKTHAEVQG----------- 172
            :|||.|.|||:|||||:|..:||||.|...||||:.|:.|.:..|::.|.|::.           
  Rat   145 VCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDELEDLPSPPPPLSPP 209

  Fly   173 --------------------------------SAQKSHICP------------------------ 181
                                            .:..|||..                        
  Rat   210 PTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAALAAKNHPFYTSPAVFMANHGQP 274

  Fly   182 ---------HKTGTG-------------------------------------------------- 187
                     |.||:.                                                  
  Rat   275 IPGLISYSHHATGSADKRIPDSIISRGVQVLPRDTASLSTTPSESPRAQATSRLSTASCPTPKQI 339

  Fly   188 -----------------------------------------------------TDSDRNSPYPM- 198
                                                                 |.:||.|.:|: 
  Rat   340 RRPDESKGVASRVGSLKARLPSCSSTYSVSELHSRLEGLKDELWRSRGYDLRVTITDRRSCFPLA 404

  Fly   199 -LPVQEVLSI---IFNTVQKTANLNKI--------------------LLEMNAPV---------- 229
             :.||...|.   |........::.|:                    :||| .||          
  Rat   405 NMAVQSRCSSKENILRASHSAVDITKVARRHRMSPFPLTSMDKAFITVLEM-TPVLGTEIINYRD 468

  Fly   230 --------------NIPPFRASIKDGYAMKSTGFSGTKRVLGCIAAGDSPNSLPLAEDECYKINT 280
                          |:|||.||:|||||:::....|.:.::|...||:.|.. .:...:..::.|
  Rat   469 GMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQ-TVMPGQVMRVTT 532

  Fly   281 GAPLPLEADCVVQVEDTKLLQLDKNGQESL-VDILVEPQAGLDVRPVGYDLSTNDRIFPA---LD 341
            |||:|..||.|||||||:|::...:|.|.| |.|||:.:.|.|:||:|:|:...:.:...   :.
  Rat   533 GAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMG 597

  Fly   342 PSPVVVKSLLASVG-NRLILSK-PKVAIVSTGSELCSPRNQLTPGKIFDSNTTMLTELLVYFGFN 404
            ||.:   .|||:|| ..:.::| |.||::|||:||.:|.:.|.||||.|||.:.|...:...|:.
  Rat   598 PSEI---GLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYP 659

  Fly   405 CMHTCVLSDSFQRTKESLLELFEVVDFVICSGGVSMGDKDFVKSVLE-DLQFRIHCGRVNIKPGK 468
            .::..::.|:......:|.|.....|.:|.|||||||:||::|.||: ||..:||.|||.:|||.
  Rat   660 TINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGL 724

  Fly   469 PMTFASRK----DKYFFGLPGNPVSAFVTFHLFALPAIRFAAGWDRCKCSL----SVLNVKLLND 525
            |.|||:..    .|..|.||||||||.||.:||.:||:|...|      .|    :::..:|..|
  Rat   725 PTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQG------ILDPRPTIIKARLSCD 783

  Fly   526 FSLDSRPEFVRASVISKSGE--LYASVNGNQISSRLQSIVGADVLINLPARTSDRPLAKAGEIFP 588
            ..||.|||:.|..:.....|  .:|...|||:||||.|:..|:.|:.||.:|........||:..
  Rat   784 VKLDPRPEYHRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVD 848

  Fly   589 ASVL 592
            ..|:
  Rat   849 VMVI 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cinNP_477030.1 MogA_MoaB 4..156 CDD:238451 74/166 (45%)
MoeA 198..595 CDD:223380 157/461 (34%)
MoeA 211..592 CDD:238452 152/441 (34%)
GphnXP_038968821.1 MogA_MoaB 15..182 CDD:238451 74/166 (45%)
MoeA 446..852 CDD:238452 151/416 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340510
Domainoid 1 1.000 130 1.000 Domainoid score I5099
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H10820
Inparanoid 1 1.050 373 1.000 Inparanoid score I2050
OMA 1 1.010 - - QHG55901
OrthoDB 1 1.010 - - D1114121at2759
OrthoFinder 1 1.000 - - FOG0003343
OrthoInspector 1 1.000 - - oto96435
orthoMCL 1 0.900 - - OOG6_100792
Panther 1 1.100 - - LDO PTHR10192
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2231
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.870

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