DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cin and Gphn

DIOPT Version :9

Sequence 1:NP_477030.1 Gene:cin / 30973 FlyBaseID:FBgn0000316 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_006515964.1 Gene:Gphn / 268566 MGIID:109602 Length:839 Species:Mus musculus


Alignment Length:832 Identity:242/832 - (29%)
Similarity:363/832 - (43%) Gaps:253/832 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ITFGVLTISDTCWQEPEKDTSGPILRQLIGE--TFANTQVIGNIVPDEKDIIQQELRKWIDREEL 66
            |..||||:||:|::...:|.||..|:.|:.:  ....|.....|||||.:.|::.|..|.|.:||
Mouse    15 IRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKEL 79

  Fly    67 RVILTTGGTGFAPRDVTPE-------------ATRQLLEKECPQLSMYITLESIKQTQYAALSRG 118
            .:|||||||||||||||||             ||::::|:|.|.:::.:.:.|:..|....|||.
Mouse    80 NLILTTGGTGFAPRDVTPEKFPTFPFCGLQKGATKEVIEREAPGMALAMLMGSLNVTPLGMLSRP 144

  Fly   119 LCGIAGNTLILNLPGSEKAVKECFQTISALLPHAVHLIGDDVSLVRKTHAEVQG----------- 172
            :|||.|.|||:|||||:|..:||||.|...||||:.|:.|.:..|::.|.|::.           
Mouse   145 VCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDELEDLPSPPPPLSPP 209

  Fly   173 --------------------------------SAQKSHICP------------------------ 181
                                            .:..|||..                        
Mouse   210 PTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAALAAKKHPFYTSPALFMANHGQP 274

  Fly   182 ---------HKTGTG-------------------------TDSD--------------------- 191
                     |.||:.                         |.|:                     
Mouse   275 IPGLISYSHHATGSADKRIPDSIISRGVQVLPRDTASLSTTPSESPRAQATSRLSTASCPTPKQI 339

  Fly   192 ----------------------------------------------------------------- 191
                                                                             
Mouse   340 RRPDESKGVASRVGSLKARLPSCSSTYSVSELHSRLEGLKDELWRNRGYDLRVQSRCSSKENILR 404

  Fly   192 ---------------RNSPYPM-------LPVQEVLSII-FNTVQKTANLNKILL-EMNAPVNIP 232
                           |.||:|:       :.|.|:..:: ...:.....:.::|. ::.|..|:|
Mouse   405 ASHSAVDITKVARRHRMSPFPLTSMDKAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLP 469

  Fly   233 PFRASIKDGYAMKSTGFSGTKRVLGCIAAGDSPNSLPLAEDECYKINTGAPLPLEADCVVQVEDT 297
            ||.||:|||||:::....|.:.::|...||:.|.. .:...:..::.||||:|..||.|||||||
Mouse   470 PFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQ-TVMPGQVMRVTTGAPIPCGADAVVQVEDT 533

  Fly   298 KLLQLDKNGQESL-VDILVEPQAGLDVRPVGYDLSTNDRIFPA---LDPSPVVVKSLLASVG-NR 357
            :|::...:|.|.| |.|||:.:.|.|:||:|:|:...:.:...   :.||.:   .|||:|| ..
Mouse   534 ELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEI---GLLATVGVTE 595

  Fly   358 LILSK-PKVAIVSTGSELCSPRNQLTPGKIFDSNTTMLTELLVYFGFNCMHTCVLSDSFQRTKES 421
            :.::| |.||::|||:||.:|.:.|.||||.|||.:.|...:...|:..::..::.|:......:
Mouse   596 VEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNA 660

  Fly   422 LLELFEVVDFVICSGGVSMGDKDFVKSVLE-DLQFRIHCGRVNIKPGKPMTFASRK----DKYFF 481
            |.|.....|.:|.|||||||:||::|.||: ||..:||.|||.:|||.|.|||:..    .|..|
Mouse   661 LNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIF 725

  Fly   482 GLPGNPVSAFVTFHLFALPAIRFAAGWDRCKCSL----SVLNVKLLNDFSLDSRPEFVRASVISK 542
            .||||||||.||.:||.:||:|...|      .|    :::..:|..|..||.|||:.|..:...
Mouse   726 ALPGNPVSAVVTCNLFVVPALRKMQG------ILDPRPTIIKARLSCDVKLDPRPEYHRCILTWH 784

  Fly   543 SGE--LYASVNGNQISSRLQSIVGADVLINLPARTSDRPLAKAGEIFPASVL 592
            ..|  .:|...|||:||||.|:..|:.|:.||.:|........||:....|:
Mouse   785 HQEPLPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVI 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cinNP_477030.1 MogA_MoaB 4..156 CDD:238451 74/166 (45%)
MoeA 198..595 CDD:223380 151/421 (36%)
MoeA 211..592 CDD:238452 148/398 (37%)
GphnXP_006515964.1 MogA_MoaB 15..182 CDD:238451 74/166 (45%)
MoeA 430..836 CDD:238452 150/415 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167836804
Domainoid 1 1.000 139 1.000 Domainoid score I4785
eggNOG 1 0.900 - - E1_COG0303
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H10820
Inparanoid 1 1.050 227 1.000 Inparanoid score I3465
Isobase 1 0.950 - 0 Normalized mean entropy S5710
OMA 1 1.010 - - QHG55901
OrthoDB 1 1.010 - - D1114121at2759
OrthoFinder 1 1.000 - - FOG0003343
OrthoInspector 1 1.000 - - oto92881
orthoMCL 1 0.900 - - OOG6_100792
Panther 1 1.100 - - LDO PTHR10192
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3940
SonicParanoid 1 1.000 - - X2231
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1716.750

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