DRSC/TRiP Functional Genomics Resources

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Protein Alignment cin and lin-46

DIOPT Version :10

Sequence 1:NP_477030.1 Gene:cin / 30973 FlyBaseID:FBgn0000316 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_506246.1 Gene:lin-46 / 179782 WormBaseID:WBGene00003031 Length:391 Species:Caenorhabditis elegans


Alignment Length:413 Identity:107/413 - (25%)
Similarity:181/413 - (43%) Gaps:63/413 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 EVLSIIFNTVQKTANL-----NKILLE-MNAPVNIPPFRASIKDGYAMKSTGFSGTKRVLGCIAA 261
            |.|..:|...:||.|:     .:||.| :....:||..|.||.||:|: .....||||.:..::.
 Worm    20 EDLCKLFPPQEKTVNVTSLKTGRILAEDIITEYDIPAQRTSIVDGFAI-IVNQLGTKREIVGLST 83

  Fly   262 GDSPNSLPLAEDECYKINTGAPLPLEADCVVQVEDTKLLQLDKNGQESLVDILVEPQAGLDVRPV 326
            ..:|.:..|..:||.:|..|..:|..||.||.:|:..||:     :|..:::|.:|:.|.::|.|
 Worm    84 AVTPYNAELISNECVRITIGGVVPDGADTVVPIENVALLK-----EEKCIEVLRKPKEGDNIREV 143

  Fly   327 GYDLSTNDRIFP---ALDPSPVVVKSLLASVGNRLILSKPKVAIVSTGSELCSPRNQLTPGKIFD 388
            |.:..|.:.:..   .||...:.:...| .:....|..||:|.::|.||:|.|       .|::.
 Worm   144 GSEAKTGEILLKDGHHLDTMSITLLHAL-GISQVEIYKKPRVCVLSIGSDLNS-------NKMYG 200

  Fly   389 S-NTTMLTELLVYFGFNCMHTCVLSDSFQRTKESLLELFEVVDFVICSGGVSMGDKDFVKSVLED 452
            | |.:.|.||....||..:.....::.....:|.:.........::..||..:     ::.|.:.
 Worm   201 SFNRSQLLELFQSQGFTAIDAGSSTEHITEVEEKIRTAASFACVLVTVGGAQV-----IREVAKT 260

  Fly   453 LQFRIHCGRVNIKPGKPMTFASRKDKYFFGL---PGNPVSAFVTFHLFALPAIRFAAGWD----- 509
            |:|:.....|:..||.......:.|:....|   |...||:::..:||..|.:|...|.:     
 Worm   261 LKFKFEIQDVDSTPGNFTVSTGKIDETPVVLSIFPEYHVSSWIGANLFVSPILRAMEGQNSETSH 325

  Fly   510 RCKCSLSVLNVKLLNDFSLDSRPEFVRA-SVISKSGELYASVNGNQISSRL--QSIVGADVLINL 571
            |.|..|:       ...|..|...|:|| |.:||         ||.||:.|  :.|.||:.::.:
 Worm   326 RFKAELT-------QPISKTSETRFLRARSEVSK---------GNLISTPLGCEDIFGANSILEV 374

  Fly   572 PARTSDRPLAKAGEIFPASVLRF 594
            .:.|    ...||::..   |||
 Worm   375 KSNT----CFSAGDVVD---LRF 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cinNP_477030.1 MogA_MoaB 4..156 CDD:238451
MoeA 211..592 CDD:238452 101/401 (25%)
lin-46NP_506246.1 MoeA 27..387 CDD:238452 101/398 (25%)
Blue background indicates that the domain is not in the aligned region.

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