DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cin and gphn

DIOPT Version :9

Sequence 1:NP_477030.1 Gene:cin / 30973 FlyBaseID:FBgn0000316 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_017951593.2 Gene:gphn / 100124966 XenbaseID:XB-GENE-989642 Length:970 Species:Xenopus tropicalis


Alignment Length:936 Identity:252/936 - (26%)
Similarity:366/936 - (39%) Gaps:365/936 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ITFGVLTISDTCWQEPEKDTSGPILRQLIGE--TFANTQVIGNIVPDEKDIIQQELRKWIDREEL 66
            |..||||:||:|::...:|.||..|:.|:.:  ....|.....|||||.|.|::.|..|.|.:||
 Frog    50 IRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIDDIKESLIDWCDEKEL 114

  Fly    67 RVILTTGGTGFAPRDVTPEATRQLLEKECPQLSMYITLESIKQTQYAALSRGLCGIAGNTLILNL 131
            .:||||||||||||||||||||:::|:|.|.:::.:.:.|:..|....|||.:|||.|.|||:||
 Frog   115 NLILTTGGTGFAPRDVTPEATREVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRGKTLIINL 179

  Fly   132 PGSEKAVKECFQTISALLPHAVHLIGDDVSLVRKTHAEVQG------------------------ 172
            |||:|..:||||.|...||||:.|:.|.:..|::.|.|::.                        
 Frog   180 PGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDELEDLPSPPPPLSPPPTTSPHKQTEDKG 244

  Fly   173 -------------------SAQKSHI--------------------------------------- 179
                               .:..|||                                       
 Frog   245 VQCEEEEEEKKDSGVASTEDSSSSHITAATIAAKSSIAAIMAKGQASIPGVISHHPTANAVEPGF 309

  Fly   180 ---CPHKTGTGTDSDRNSPYPML------------------------------------------ 199
               |.|.|.:      ::|.|.:                                          
 Frog   310 ISCCHHHTSS------SAPEPTVSSSSHHLSSSTVKPTLISSSHHTTSSSLEPSHSSCSHHASSS 368

  Fly   200 -------------------PVQEVLSIIFNTVQ----KTANL----------------------- 218
                               |:.:  |||...||    .||:|                       
 Frog   369 SVEAVPTSCSHHTTSTALEPIPD--SIISRGVQVLPRDTASLSTTPSESPRAQATSRLSTASCPT 431

  Fly   219 ---------NKIL----------------------------LEMNA------------------- 227
                     ||::                            |.:||                   
 Frog   432 PKQIRRPDENKVITNRVGSFKLHRKLENLRDHLQGNDKGYSLRVNARLPSCSSTYSVSEDIWIAA 496

  Fly   228 ----------------------------------------------------------------- 227
                                                                             
 Frog   497 PSFSQLHYKLEGLKDELRRNRGCETRVQSRCSSKENILRASHSAVDITKVARRHRMSPFPLTSMD 561

  Fly   228 ----------PV------------------------NIPPFRASIKDGYAMKSTGFSGTKRVLGC 258
                      ||                        |:|||.||:|||||:::....|.:.::|.
 Frog   562 KAFITVLEMTPVLGTEIINYRDGMGRVLAQEVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGE 626

  Fly   259 IAAGDSPNSLPLAEDECYKINTGAPLPLEADCVVQVEDTKLLQLDKNGQESL-VDILVEPQAGLD 322
            ..||:.|.. .:...:..::.||||:|..||.|||||||:|::...:|.|.| |.|||:.:.|.|
 Frog   627 SQAGEQPTQ-TVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQD 690

  Fly   323 VRPVGYDLSTNDRIFPA---LDPSPVVVKSLLASVG-NRLILSK-PKVAIVSTGSELCSPRNQLT 382
            :||:|:|:...:.:...   :.||.:   .|||:|| ..:.:.| |.||::|||:||.:|.:.|.
 Frog   691 IRPIGHDIKRGECVLAKGTHMGPSEI---GLLATVGVTEVEVHKFPVVAVMSTGNELLNPEDDLL 752

  Fly   383 PGKIFDSNTTMLTELLVYFGFNCMHTCVLSDSFQRTKESLLELFEVVDFVICSGGVSMGDKDFVK 447
            ||||.|||.:.|...:...|:..::..::.|:......:|.|.....|.:|.|||||||:||::|
 Frog   753 PGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYLK 817

  Fly   448 SVLE-DLQFRIHCGRVNIKPGKPMTFASRK----DKYFFGLPGNPVSAFVTFHLFALPAIRFAAG 507
            .||: ||..:||.|||.:|||.|.|||:..    .|..|.||||||||.||.:||.:||:|...|
 Frog   818 QVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQG 882

  Fly   508 WDRCKCSL----SVLNVKLLNDFSLDSRPEFVRASVISKSGE--LYASVNGNQISSRLQSIVGAD 566
                  .|    :::..:|..|..||.|||:.|..:.....|  .:|...|||:||||.|:..|:
 Frog   883 ------ILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSAN 941

  Fly   567 VLINLPARTSDRPLAKAGEIFPASVL 592
            .|:.||.:|........||:....|:
 Frog   942 GLLMLPPKTEQYVELHKGEVVDVMVI 967

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cinNP_477030.1 MogA_MoaB 4..156 CDD:238451 76/153 (50%)
MoeA 198..595 CDD:223380 163/655 (25%)
MoeA 211..592 CDD:238452 158/579 (27%)
gphnXP_017951593.2 MogA_MoaB 50..204 CDD:238451 76/153 (50%)
MoeA 561..967 CDD:238452 148/415 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 142 1.000 Domainoid score I4654
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H10820
Inparanoid 1 1.050 386 1.000 Inparanoid score I1980
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1114121at2759
OrthoFinder 1 1.000 - - FOG0003343
OrthoInspector 1 1.000 - - oto103148
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3940
SonicParanoid 1 1.000 - - X2231
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.090

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