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Protein Alignment G9a and Setmar

DIOPT Version :9

Sequence 1:	NP_001259088.1	Gene:	G9a / 30971	FlyBaseID:	FBgn0040372	Length:	1657	Species:	Drosophila melanogaster
Sequence 2:	NP_001020219.1	Gene:	Setmar / 500281	RGDID:	1565882	Length:	315	Species:	Rattus norvegicus

Alignment Length:	325	Identity:	101/325 - (31%)
Similarity:	149/325 - (45%)	Gaps:	58/325 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly  1366 ARPIQVVRNELAMSENEDEA-----------DSL---MWP--------DFRYVTQCIIQQNSVQI 1408
            |..::.:..|:|.||.|.||           ::|   :||        .|:|....:....   :
  Rat     3 AEAVKKLSFEIAPSEEESEATIEQQDVACGLENLPVSLWPLGAGPRPKPFQYTPDHVAGPG---V 64

  Fly  1409 DRRVSQMRI--CSCLDS-CSSDRCQC-NGASSQNWYTAESRLNADFNYEDPAVIFECNDVCGCNQ 1469
            |...:|:..  |:|:.: |....|.| ...|:.|.......:.::..|..|  :||||.:|.|.:
  Rat    65 DMDPTQITFPGCACIKTPCVPGTCSCLRHESNYNDNLCLRDVGSEAKYAKP--VFECNVLCQCGE 127

  Fly  1470 LSCKNRVVQNGTRTPLQIVECEDQAKGWGVRALANVPKGTFVGSYTGEILTAMEADRRT------ 1528
             .|:|||||:|.:..||:.:.|  .||||:|.|..:|||.||..|.||:|...|..||.
  Rat   128 -HCRNRVVQSGLQFLLQVFQTE--KKGWGLRTLEYIPKGRFVCEYAGEVLGFSEVQRRIHLQTAH 189

  Fly  1529 DDSYYFDLD----NGHC----IDANYYGNVTRFFNHSCEPNVL--PVRVFYEHQDYRFPKIAFFS 1583
            |.:|...|.    ||..    :|..|.||:.||.|||||||:|  |||:     |...||:|.|:
  Rat   190 DPNYIIALREHTYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRI-----DSMVPKLALFA 249

  Fly  1584 CRDIDAGEEICFDYGEKFWR---VEHRSCVGCRCLTTTCKYASQSSSTNASPTNATTAPENETGT 1645
            .:||..|||:.:||..:|..   .:.:..:.|......|...:||.:|.....::...|....||
  Rat   250 AKDILPGEELSYDYSGRFLNQISSKDKERIDCGQPRKPCYCGAQSCATFLPYDSSLYGPLENPGT 314

Fly 1646 1645
Rat 315 314

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.