DRSC/TRiP Functional Genomics Resources

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Protein Alignment G9a and setdb1

DIOPT Version :9

Sequence 1:NP_001259088.1 Gene:G9a / 30971 FlyBaseID:FBgn0040372 Length:1657 Species:Drosophila melanogaster
Sequence 2:NP_001238764.2 Gene:setdb1 / 100490309 XenbaseID:XB-GENE-853380 Length:1282 Species:Xenopus tropicalis


Alignment Length:593 Identity:98/593 - (16%)
Similarity:144/593 - (24%) Gaps:332/593 - (55%)


- Green bases have known domain annotations that are detailed below.


  Fly  1344 RSFRPLGLRTFVVCADASNGREARPIQVVRNELAMSENEDEADSLMWPDFRYVTQCIIQQNSVQI 1408
            |.|:|  .:.|....|.:.|:|..|:..|          :|.|....|...|..: .|....|.|
 Frog   702 RKFQP--QKPFYYIPDITYGKEDVPLSCV----------NEIDRTPPPQVAYSKE-RIPGKGVFI 753

  Fly  1409 DRRVSQMRICSCLDSC-SSDRCQCNGASSQ-NWYTAESRLNADFNYED-------PAVIFECNDV 1464
            :.....:..|.|.|.| ...:|.|:..:.| ...|..::||....|:.       |..::|||..
 Frog   754 NTGAEYLVGCDCTDGCRDKSKCACHQLTIQATGCTPGAQLNPMAGYQHKRLEECLPTGVYECNKR 818

  Fly  1465 CGCNQLSCKNRVVQNGTRTPLQIVECEDQAKGWGVRALANVPKGTFVGSYTGEILTAMEADR--- 1526
            |.|:...|.||:||:|.:..||:.  :.|.||||:|.|.::.||:||..|.|:|||...||:   
 Frog   819 CKCSANMCNNRLVQHGLQVRLQLF--KTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGL 881

  Fly  1527 RTDDSYYFDLD------------------------------------------------------ 1537
            ...|.|:.:||                                                      
 Frog   882 EMGDEYFANLDHIESVENYKEGYESDAKSSSDSSGVDLKDDDEENTGSEDQDESNDSSDDNFGKN 946

  Fly  1538 ----------------------------------------------------------------- 1537
                                                                             
 Frog   947 EDITTSSVWRSYATRRQTRGQKENGTSETASKDSALARQTSQDETTDCKLPEETSKNKVASWLSS 1011

  Fly  1538 ----------------------------------------------------------------- 1537
                                                                             
 Frog  1012 NTMADSLMDSDSRSSLKMGDASETDKPKESDEASKYPGFGEGNRMYGYNPAPAKKDGVRRPVSKT 1076

  Fly  1538 ---------------------------------NG------------------------------ 1539
                                             ||                              
 Frog  1077 ALHQNKRQSNSAQPTDEVLTLSSSSESEVGSGTNGTKKPAAQATANDSDDIQTISSGSDEEEEKK 1141

  Fly  1540 ---------------------------------------------------------HCIDANYY 1547
                                                                     :.|||...
 Frog  1142 NVATTAGPVKRQVAVKSTRGFALKSTHGITVKTNMASGEGGTGRRNTRQFFDGEESCYIIDAKLE 1206

  Fly  1548 GNVTRFFNHSCEPNVLPVRVFYEHQDYRFPKIAFFSCRDIDAGEEICFDYGEKFWRVEHRSCVGC 1612
            ||:.|:.||||.||:....||.:..|.|||.:|||:.:.|.||.|:.:||..:...||.:..: |
 Frog  1207 GNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKKLL-C 1270

  Fly  1613 RCLTTTCK 1620
            .|.:|.|:
 Frog  1271 CCGSTECR 1278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
G9aNP_001259088.1 ATP-synt_B 150..248 CDD:304375
Ank_2 1056..1152 CDD:289560
ANK 1088..1217 CDD:238125
ANK repeat 1088..1120 CDD:293786
ANK repeat 1124..1153 CDD:293786
Ank_2 1127..1249 CDD:289560
ANK 1155..1306 CDD:238125
ANK repeat 1155..1196 CDD:293786
ANK repeat 1199..1249 CDD:293786
Ank_2 1205..1316 CDD:289560
ANK repeat 1251..1283 CDD:293786
ANK repeat 1285..1316 CDD:293786
PreSET 1357..1466 CDD:128744 27/117 (23%)
SET 1495..1602 CDD:214614 50/413 (12%)
setdb1NP_001238764.2 DUF5604 193..250 CDD:408109
Tudor_SETDB1_rpt1 260..341 CDD:410453
Tudor_SETDB1_rpt2 348..401 CDD:410548
SP1-4_N <515..>594 CDD:425404
MBD 631..706 CDD:128673 2/3 (67%)
SET_SETDB1 708..>905 CDD:380915 60/209 (29%)
MSCRAMM_ClfB <918..1045 CDD:411414 0/126 (0%)
SET <1193..1282 CDD:394802 33/87 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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