DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cngb3 and CG42260

DIOPT Version :9

Sequence 1:NP_038955.1 Gene:Cngb3 / 30952 MGIID:1353562 Length:694 Species:Mus musculus
Sequence 2:NP_001356969.1 Gene:CG42260 / 37614 FlyBaseID:FBgn0259145 Length:1269 Species:Drosophila melanogaster


Alignment Length:461 Identity:151/461 - (32%)
Similarity:254/461 - (55%) Gaps:17/461 - (3%)


- Green bases have known domain annotations that are detailed below.


Mouse   176 HQDTFSFKPQRVPVKEHLRRMILPRSIDSYTD---RVYLLWLLLVTIAYNWNCWLLPVRLVFPCQ 237
            ||     ||:|. ..:.:|.....|.:....|   |:...|.::|::|:.:|.|::..|..|...
  Fly   549 HQ-----KPRRT-ASQRIRAATAARKLHFVFDPAGRLCYYWSMVVSMAFLYNFWVIIYRFAFQEI 607

Mouse   238 TPDNKNYWIITDIVCDIIYLCDILLIQPRLQFVRGGEIIVDSNELKRNYRSSTKFRMDVASLLPF 302
            .......|...|.:.|.:||.|| |...|..::..|.:..|:.:|:.:|.:||.|.:|...|||.
  Fly   608 NRRTIAIWFCLDYLSDFLYLIDI-LFHFRTGYLEDGVLQTDALKLRTHYMNSTIFYIDCLCLLPL 671

Mouse   303 EVLYIFFGVNPIFRANRILKYTSFFEFNHHLESIMDKAYVYRVIRTTGYLLFLLHINACVYYWAS 367
            :.||:..|.|.|.|:.|::|...|:.|....|...:...::|......|||.:.|.|.|:|:...
  Fly   672 DFLYLSIGFNSILRSFRLVKIYRFWAFMDRTERHTNYPNLFRSTALIHYLLVIFHWNGCLYHIIH 736

Mouse   368 DYEGIGSTKWVYNGEGN-----KYLRCFYWAVRTLITIGGLPEPQTSFEIVFQFLNFFSGVFVFS 427
            ...|.||..|||:...:     :||:.:||....|.|||.||:|::..|.||..|....|:.:|:
  Fly   737 KNNGFGSRNWVYHDSESADVVKQYLQSYYWCTLALTTIGDLPKPRSKGEYVFVILQLLFGLMLFA 801

Mouse   428 SLIGQMRDVIGAATANQNYFQACMDHIIAYMNKYSIPQSVQYRVRTWLEYTWNSQRILDESNLLE 492
            :::|.:.:::.:.:|.:..|||.:|.:..||....:|..:|.:|..|.:|.|.:|:..||...:.
  Fly   802 TVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNHLQVKVIKWFDYLWLTQKCSDEERAVS 866

Mouse   493 NLPTAMQLSIALDINFSIIDKVELFKGCDTQMIYDLLLRLKSTIYLPGDFVCKKGEIGKEMYIIK 557
            .||..::..||::::...:.:||:|:..:...:.:|:|||:..::.|||::|:|||:||||||:.
  Fly   867 CLPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGEVGKEMYIVN 931

Mouse   558 HGEVQVLGGPDGAQVLVTLKAGSVFGEISLLAKG-GGNRRTADVVAHGFANLLTLDKKTLQEILL 621
            .|.:||: ..:|..|:.:|||||.|||||:|..| .||||||.|.:.|:::|..|.||.:.::|.
  Fly   932 RGRLQVV-ADNGKTVMASLKAGSYFGEISILNMGTAGNRRTASVRSVGYSDLFVLSKKDMWDVLK 995

Mouse   622 HYPTSK 627
            .||.::
  Fly   996 EYPAAR 1001

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Cngb3NP_038955.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 24..82