DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmcd1 and esn

DIOPT Version :9

Sequence 1:NP_659048.1 Gene:Lmcd1 / 30937 MGIID:1353635 Length:365 Species:Mus musculus
Sequence 2:NP_001260760.1 Gene:esn / 53557 FlyBaseID:FBgn0263934 Length:1134 Species:Drosophila melanogaster


Alignment Length:243 Identity:91/243 - (37%)
Similarity:119/243 - (48%) Gaps:37/243 - (15%)


- Green bases have known domain annotations that are detailed below.


Mouse   118 YEWAPPGVTQKLGLQYMELIPKERQPVTGTEGALYRRRQLMHQLPIYDQDPSRCRGLVENELKAM 182
            |.|.|||:.......|...:|.::.|...:.|..||.:||:||||..|.:...|..|.:.|.|.:
  Fly   503 YTWVPPGLRPDQVRLYFSQLPDDKVPYVNSPGEKYRVKQLLHQLPPQDNEVRYCHSLSDEERKEL 567

Mouse   183 EEFVKHYKSEALGVGEVALPGQGGLPKEENKTQEKP-EGTETTAPTTNGSLGDPSKEVEYVCELC 246
            ..|....|.||||.|.|.|           .:.|:| :|.|  .|.:.|.:              
  Fly   568 RIFSAQRKREALGRGAVRL-----------LS
DERPCKGCE--EPLSGGDI-------------- 605

Mouse   247 KGAAPVDSPVVYADRAGYSKQWHPTCFQCIKCSEPLVDLIYFWKDGAPWCGRHYCESVRPRCSGC 311
                     ||:|.|.|....|||.||.|..|.|.|||||||.:||..:||||:.|:.:||||.|
  Fly   606 ---------VVFAQRLGAQLCWHPGCFVCSVCKELLVDLIYFQRDGNLYCGRHHA
ETQKPRCSAC 661

Mouse   312 DEIIFSEDYQRVEDLAWHRKHFICEGCEQLLSGRAYIVTKGQLLCPTC 359
            ||||||::....|...||.|||.|:.||..|.|:.||:.:|:..|..|
  Fly   662 DEIIFSDECTEAEGRTWHMKHFACQECEHQLGGQRYIMREGKPYCLAC 709

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmcd1NP_659048.1 PET_testin 116..203 CDD:193604 31/84 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 200..231 6/31 (19%)
LIM1_Testin_like 243..300 CDD:188726 25/56 (45%)
LIM 306..359 CDD:295319 26/52 (50%)
esnNP_001260760.1 PET_Prickle 492..588 CDD:193602 31/95 (33%)
LIM1_Prickle 593..651 CDD:188799 30/82 (37%)
LIM2_Prickle 656..711 CDD:188802 27/54 (50%)
LIM3_Prickle 716..774 CDD:188804
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D422310at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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