DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sigirr and CG45263

DIOPT Version :9

Sequence 1:NP_001020058.1 Gene:Sigirr / 309106 RGDID:1306732 Length:409 Species:Rattus norvegicus
Sequence 2:NP_731246.2 Gene:CG45263 / 50003 FlyBaseID:FBgn0266801 Length:1876 Species:Drosophila melanogaster


Alignment Length:218 Identity:47/218 - (21%)
Similarity:81/218 - (37%) Gaps:58/218 - (26%)


- Green bases have known domain annotations that are detailed below.


  Rat     9 PNFLSPSEDQALGPALGSAVALNCTAWVFSRPQCPQPSVQWLKDGLALGNGSHFSLHQDFWVSDN 73
            |..:|...|:.....|.|..|..|.|     ...|.||.:|::   .:.:||.:        .:.
  Fly   372 PKIISAGPDRLTTAPLFSPAAFECLA-----DGNPLPSFKWVQ---RMAHGSKY--------VER 420

  Rat    74 FSEIVSSVLVFNLTKAEDYGTFTCSAWN--------VSSHSFTLWRAG--------PAGHVAAVL 122
            .||  |.:::.|:| .|..|.:.|.|.:        ..|...:|...|        |:.|..:|.
  Fly   421 GSE--SRLVIDNVT-YEYQGEYECRATSYINGQERVAISDPVSLQVVGAPQVLRLHPSLHTVSVK 482

  Rat   123 ---ASLLVLVVLLLVALLYVKC---RLNVLLWYQDTYGEVEMNDGKLYDAYVSYSDRPEDRK--F 179
               |:.|.:||          |   |...:.|   .:|.:.:..|...|.:.:...:|:.|:  :
  Fly   483 RGEAASLTMVV----------CADPRPQRVAW---EWGSLRLEAGSGIDRFRADDMQPDTREDCY 534

  Rat   180 VN--FILKPQLERRRGYKLFLED 200
            ::  .||.......|.|.|.:|:
  Fly   535 LSTLHILHADEHDSRPYYLVVEN 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SigirrNP_001020058.1 Ig_3 9..101 CDD:404760 23/91 (25%)
Ig strand B 28..32 CDD:409353 1/3 (33%)
Ig strand C 46..50 CDD:409353 1/3 (33%)
Ig strand E 80..84 CDD:409353 0/3 (0%)
Ig strand F 94..99 CDD:409353 1/4 (25%)
TIR 164..309 CDD:214587 9/41 (22%)
CG45263NP_731246.2 I-set 53..149 CDD:254352
Ig 198..281 CDD:299845
IG_like 302..368 CDD:214653
IGc2 302..357 CDD:197706
Ig 372..446 CDD:299845 23/92 (25%)
Ig 475..568 CDD:299845 20/96 (21%)
IG_like 478..570 CDD:214653 19/93 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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