Sequence 1: | XP_017214701.2 | Gene: | robo1 / 30769 | ZFINID: | ZDB-GENE-000209-3 | Length: | 1705 | Species: | Danio rerio |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001259868.1 | Gene: | robo2 / 44522 | FlyBaseID: | FBgn0002543 | Length: | 1519 | Species: | Drosophila melanogaster |
Alignment Length: | 1646 | Identity: | 454/1646 - (27%) |
---|---|---|---|
Similarity: | 701/1646 - (42%) | Gaps: | 374/1646 - (22%) |
- Green bases have known domain annotations that are detailed below.
Zfish 58 QQRHHNSKKHKCFQDFQRSRLR-----------------------------QEDYAPRIVEHPSD 93
Zfish 94 LIVSKGEPATLNCKAEGRPTPTVEWYKDGERVETDRDNPRSHRMLLPTGSLFFLRIVHGRRSKPD 158
Zfish 159 EGSYVCVARNYLGEAVSHNASLEVAILRDDFRQNPVDVMVAAGEPAVMECQPPRGHPEPTISWKK 223
Zfish 224 DGVNID---DRDERITIRGGKLMITNTRKTDAGKYVCVGTNMMGERESEIAELTVLERPSFLRKP 285
Zfish 286 SSQSVLVDQSVEFRCEAQGDPVPTIRWRK--EDGELPKGRYEIWEDHTLKLKRLTSGDAGTYTCQ 348
Zfish 349 AENMMGKTEASATLTVHVVSVPPVFVVRPRNQVAGMGRTVTFQCEATGSPQPAIFWQKEGSQNLL 413
Zfish 414 FSSQPPPPSSRFSVSQTGD----LTITAVERSDGG-YYSCQALNIAGSVITKALLEVTDVISDRP 473
Zfish 474 PPIVRQGPTNQTVAVDGTVVLSCQATGTPIPTILWRKDGVLVSTHDSRLKQL-DTGALQIR-YAK 536
Zfish 537 LGDTGMYTCTASTPSGEASWKAYLEVQEFGAPVQPGRPTDPNL----------IPSAPSKPDVTD 591
Zfish 592 VSRTSVSLSW-KPNLNAGATPTSYVIEAFSHAAGSSWQTLADHVKTESFVLKGLKPSAVYLFLVR 655
Zfish 656 AANAYGLSDPSPISDAVKTQDVPPTSQGVEHGQIQREL--GDVVIHLHNPTILSSSSVRVQWTVE 718
Zfish 719 QQSQYIQGYKVMYRPSPE----------------------------------------------- 736
Zfish 737 --------GAPQRVD--WAMFEV-GAPGEHSAVVTQLKKGITYEFKVRPFFNEFQGTDSDIKVGK 790
Zfish 791 TLEEAPSAAPRGVTVTGSGDNGTAVLVAWQPPPEEEQNGVVQEYKIWCLG-----NESRYHINRT 850
Zfish 851 VDGSTHSVLIPGLVAGVTYRLEVAAGTGAGPGVKSDPTSFQLDSSGRVLPPPLDDDNTISQ-QIS 914
Zfish 915 DVVRQPAFIAGIGAACWIILMVFSIWLYRHRK----KRNGLS----SSYAGIRKVPSFTFTPTVA 971
Zfish 972 YQRGGEAV---SSAG----RPGLLNIGEPATQPWLADTWPNSCSNHNDCTINCCTGSNGNSDSNL 1029
Zfish 1030 ATYSRPADCIANYSNQMDNKATNLLAPDTGLYSDVDLSNKINEMKTFNSPNLKDGRFMGPGGQPT 1094
Zfish 1095 PYATTQLIQSSLANNNMNSSSGGSGGGSADFNEKQSWKSSQGTPQKQADINTPL----QYNVMEQ 1155
Zfish 1156 NKLNKDHYRGEG-------PISVTIPYNQAQDVLTGETYSSSDRGSSTSGSQGQ------KKGGR 1207
Zfish 1208 TTKQAKQNPMNWTELLPPPPVNPPPCQEYTLVMDDSYDTDLQCPLPPS---------RMYLQPDE 1263
Zfish 1264 LEEEEDEVELE------RGPTPPVRGAASSPAAVSYSHQSTATLTPSPQEEMHPMLQDNPDLHER 1322
Zfish 1323 RRLLVSPPPPPR------PLSPPHTYGYISSPLGLDTDGLEEEDDDEEEGDETDAEVARVHQHHM 1381
Zfish 1382 MHPHQQHLPQQRALLRGLEQTPASS-----TCDLESSVTGSMINGWGSASEEDNASSGRSSAVSS 1441
Zfish 1442 SDGSFFTDADFAQAVAAAAEYAGLRVAKHPGKGHHQLPVSGAARKYQNLPAGHR-----PGSPVS 1501
Zfish 1502 TDSNVSAAPGQ-RRPLKRQKQ 1521 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
robo1 | XP_017214701.2 | Ig1_Robo | 84..183 | CDD:143317 | 51/98 (52%) |
Ig | 191..275 | CDD:325142 | 39/86 (45%) | ||
Ig3_Robo | 296..363 | CDD:143202 | 27/68 (40%) | ||
Ig | 385..474 | CDD:325142 | 31/93 (33%) | ||
Ig_3 | 474..548 | CDD:316449 | 32/75 (43%) | ||
FN3 | 581..672 | CDD:238020 | 35/91 (38%) | ||
FN3 | 704..791 | CDD:238020 | 23/144 (16%) | ||
fn3 | 799..885 | CDD:306538 | 29/90 (32%) | ||
Herpes_ICP4_C | 1491..>1653 | CDD:332854 | 12/37 (32%) | ||
robo2 | NP_001259868.1 | Ig1_Robo | 90..185 | CDD:143317 | 51/98 (52%) |
I-set | 91..184 | CDD:254352 | 51/96 (53%) | ||
I-set | 190..279 | CDD:254352 | 41/89 (46%) | ||
Ig2_Robo | 193..279 | CDD:143201 | 39/86 (45%) | ||
I-set | 283..370 | CDD:254352 | 34/86 (40%) | ||
Ig | 300..370 | CDD:299845 | 28/69 (41%) | ||
Ig | 388..>457 | CDD:299845 | 24/71 (34%) | ||
I-set | 479..561 | CDD:254352 | 34/81 (42%) | ||
Ig | 496..561 | CDD:143165 | 25/64 (39%) | ||
FN3 | 588..681 | CDD:238020 | 35/93 (38%) | ||
FN3 | <817..856 | CDD:238020 | 11/38 (29%) | ||
fn3 | 864..952 | CDD:278470 | 29/89 (33%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 104 | 1.000 | Domainoid score | I6635 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0000772 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_101537 | |
Panther | 1 | 1.100 | - | - | O | PTHR12231 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X493 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
7 | 6.910 |