DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Csf1r and btl

DIOPT Version :9

Sequence 1:NP_001025072.1 Gene:Csf1r / 307403 RGDID:2425 Length:1022 Species:Rattus norvegicus
Sequence 2:NP_001014583.1 Gene:btl / 39564 FlyBaseID:FBgn0285896 Length:1052 Species:Drosophila melanogaster


Alignment Length:1130 Identity:294/1130 - (26%)
Similarity:460/1130 - (40%) Gaps:319/1130 - (28%)


- Green bases have known domain annotations that are detailed below.


  Rat    82 VTLRCVSNGSVEWDGPISPYWTLDS-ESPGSILITKNATFKNTGTYRCTELE------------- 132
            :||:||.        |::.::..|. :...::|..:.|...|:|.|.|.:.:             
  Fly    51 ITLQCVR--------PMAKWFYEDKFQLRATLLRLERAQSGNSGNYGCLDSQNRWYNISLVVGHK 107

  Rat   133 DPMRGSTAIHLYVKD-PVRP-WNLLAQEVTVFEGQEAVLP----------------CLITDPTLK 179
            :|:....|..:.::| |..| .:|..|.:......:.:.|                |...||..|
  Fly   108 EPVGNDIASFVKLEDAPALPESDLFFQPLNESRSLKLLQPLPKTVQRTAGGLFQLNCSPMDPDAK 172

  Rat   180 DSVSLVREWGRPVSRKTVYSFLPWRGFIIHKAKFL--------DSHTYMCKAVVNARESTSIGIR 236
             .|::  .|   :...|  ..|..||.|..|...|        |:.:|.|:..|......|...:
  Fly   173 -GVNI--SW---LHNDT--QILGGRGRIKLKRWSLTVGQLQPEDAGSYHCELCVEQDCQRSNPTQ 229

  Rat   237 LKV-NRAHPGPPHIILEP-----TKLVRIRGEAAQIVCSATHSEVEFNV-------------ILK 282
            |:| :|.|..|   :|:|     |.:.  .|:...|.|....|.:|..:             :|:
  Fly   230 LEVISRKHTVP---MLKPGYPRNTSIA--LGDNVSIECLLEDSALEPKITWLHKGNADNIDDLLQ 289

  Rat   283 RGDTKLEIPINSDFQDNAYKKVLTLNLNAVDFQDAGIYSCVANNAAGSNTATMNFQVVESAYLNL 347
            |...:.::|::.........:...|.|..|..:|.|.|.|:|.|..|        :.|.::|::|
  Fly   290 RLREQSQLPVDVTRLITRMDEPQVLRLGNVLMEDGGWYICIAENQVG--------RTVAASYVDL 346

  Rat   348 --------------TSEQSLLQEVSVGENLDLTV---IADAYPG---------LQRYNWTYLG-- 384
                          |:..|.:...|.||:.|..|   .|:|..|         |:|...:..|  
  Fly   347 YSPSDTTTVRTTTTTTVASPIPTASTGEDNDDDVENPAAEASGGVGPPVFRKELKRLQHSLSGNT 411

  Rat   385 -----PFF----------EDPHNLEF----RTQWTTYSYSFKLHLNRVKPLEAGRYSLMAQNKAG 430
                 |.:          :.|.|.|.    :..||       |........::|.|:....|  .
  Fly   412 VNLACPVYGKANITWTKDKKPLNRELGVYVQKNWT-------LRFVEATSEDSGLYNCKVCN--A 467

  Rat   431 WNNLTFELTL------RYPPEVSV---TWIPVNGSDVLLCDVSGYPQPNVTWMECRGHTDRCDEA 486
            |..:.|:.::      |..|.:.|   ..:.||||.|:.|.|.....|.|:|..........|..
  Fly   468 WGCIQFDFSVQINDRTRSAPIIVVPQNQTVKVNGSLVMKCTVYSDLHPTVSWKRVVLKNASLDGL 532

  Rat   487 QASQ-------VWDDTQPEVLSQKPFHRVILQSQLPIGTLKHNMT------YVCRAHNNVG--NS 536
            ::.:       |.:|:            |:|       ||: |:|      |.|.|.:.:|  ||
  Fly   533 KSVEIQNLNFTVTNDS------------VVL-------TLR-NVTFDQEGWYTCLASSGLGRSNS 577

  Rat   537 SQFFRAISLGQSKQLPDEYLFT-----PV--VVACISVMSLLVL---LLLLLLYKYKQKPKYQVR 591
            |.:.|.:|     .||...::.     |:  .:|.|::::|.:|   .:..:|.:.:::...::|
  Fly   578 SVYLRVVS-----PLPPLEIYALLHAHPLGFTLAAITIVALFLLGSAFITFMLRRLRREKLLKLR 637

  Rat   592 WKIIESY------------EGNNYTF------------------------IDPTQ------LPYN 614
            .:.:..:            ||:..:.                        .||.|      .|.:
  Fly   638 IETVHQWTKKVIIYRPGGEEGSGCSSGDLQMPVIRIEKQRTTVSTTGTGGTDPAQGFNEYEFPLD 702

  Rat   615 EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLK--VAVKMLKSTAHAD-EKEALMSEL 676
            ..||.||..|..|..||.||||:||.|.|.||.:...:.:  |||||:|. .|.| :..:|:.|:
  Fly   703 SNWEIPRQQLSLGSILGEGAFGRVVMAEAEGLPRSPQLAETIVAVKMVKE-EHTDTDMASLVREM 766

  Rat   677 KIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAMLGPSLSPGQDPEGDSSY 741
            ::|..:|:|.||:||||.|:.|||:.||.||..:|:|.:||::.         .||....     
  Fly   767 EVMKMIGKHINIINLLGCCSQGGPLWVIVEYAPHGNLKDFLKQN---------RPGAPQR----- 817

  Rat   742 KNIHLEKKYVRRDSGFSSQGVDTYVEMRP-VSTSSNDSFFKQDLDKEASRPLELWDLLHFSSQVA 805
                      |.||       |.|::.:| :||        |.|.::        :|..|:.|:|
  Fly   818 ----------RSDS-------DGYLDDKPLIST--------QHLGEK--------ELTKFAFQIA 849

  Rat   806 QGMAFLASKNCIHRDVAARNVLLTSGHVAKIGDFGLARDIMNDSNYVVKGNARLPVKWMAPESIF 870
            :||.:|||:.|||||:||||||::.|:|.||.||||||||.:...|....|.|||:|||||||:.
  Fly   850 RGMEYLASRRCIHRDLAARNVLVSDGYVMKIADFGLARDIQDTEYYRKNTNGRLPIKWMAPESLQ 914

  Rat   871 DCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNNKFYKLVKDGYQMAQPVFAPENIYSIMQSCW 935
            :..|..||||||||:|||||.:.|..|||.||...:.|..:..|.:|.:|.....|||.:|:.||
  Fly   915 EKKYDSQSDVWSYGVLLWEIMTYGDQPYPHILSAEELYSYLITGQRMEKPAKCSLNIYVVMRQCW 979

  Rat   936 DLEPTKRPTFQQIC----FLLQEQARLERREQDYANLPSSSSSSSSSSDSGGGSGGSSSEPEEES 996
            ..|...||||.::.    .:||:.:    ...:.|.|..|.....:...||....||.:|...|:
  Fly   980 HFESCARPTFAELVESFDGILQQAS----SNPNDAYLDLSMPMLETPPSSGDEDDGSDTETFRET 1040

  Rat   997 SSEHLACCEPGDIAQPLLQPNNYQF 1021
            |              ||.....|:|
  Fly  1041 S--------------PLRYQYTYKF 1051

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Csf1rNP_001025072.1 Ig 69..129 CDD:299845 11/47 (23%)
IG_like 72..145 CDD:214653 14/76 (18%)
IG_like 157..239 CDD:214653 21/105 (20%)
Ig 157..223 CDD:299845 18/89 (20%)
ig 251..337 CDD:278476 21/103 (20%)
IG_like 253..339 CDD:214653 20/103 (19%)
Ig 343..442 CDD:299845 27/151 (18%)
IG_like 355..439 CDD:214653 23/116 (20%)
Ig 458..541 CDD:143165 22/97 (23%)
PTKc_CSF-1R 585..957 CDD:133237 149/421 (35%)
Pkinase_Tyr 624..948 CDD:285015 136/327 (42%)
btlNP_001014583.1 IG_like 149..232 CDD:214653 19/90 (21%)
IGc2 157..215 CDD:197706 15/65 (23%)
IG 247..336 CDD:214652 18/90 (20%)
Ig 258..340 CDD:143165 17/89 (19%)
I-set 394..479 CDD:254352 15/93 (16%)
IGc2 408..469 CDD:197706 11/69 (16%)
IG_like 492..583 CDD:214653 26/110 (24%)
Ig 507..583 CDD:299845 21/95 (22%)
PKc_like 700..1000 CDD:304357 141/347 (41%)
TyrKc 712..996 CDD:197581 136/331 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.