DRSC/TRiP Functional Genomics Resources

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Protein Alignment cntn2 and sdk

DIOPT Version :9

Sequence 1:NP_571521.1 Gene:cntn2 / 30726 ZFINID:ZDB-GENE-990630-12 Length:1040 Species:Danio rerio
Sequence 2:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster


Alignment Length:1137 Identity:284/1137 - (24%)
Similarity:453/1137 - (39%) Gaps:167/1137 - (14%)


- Green bases have known domain annotations that are detailed below.


Zfish     5 ILLCLLSLSFLALSNA---LGGDVCESGHDSGPVFEEQPSS--LIYPEGMPEGKVTLGCQARSSP 64
            :|||.....|...::|   ....:.:......|.|...|||  .|..||..:   .|.|.|...|
  Fly    40 VLLCYCDSCFFCYADANLQQQNSIVQQQQLQAPRFTTHPSSSGSIVSEGSTK---ILQCHALGYP 101

Zfish    65 AAVYRWRVNGTDISFAEESHYTQVAGNLVINNPQNGRDGGSYQCLAINRCGTIVSRVANLKFGYL 129
            ...|||..:|..:.....|.:.:.       :.....|.|||||:|.|..|:|.|..:::...|:
  Fly   102 QPTYRWLKDGVPVGDFSSSQFYRF-------HSTRREDAGSYQCIARNDAGSIFSEKSDVVVAYM 159

Zfish   130 RDFPPESRSPQTVHEGMGTFLACQPPAHYPALSYRWFINEFPNFIQPEAGRW-----FVSQVTGN 189
            ..|...:....||..|........|....|..|..|         |.|.|..     :.......
  Fly   160 GIFENTTEGRLTVISGHPAIFDMPPIESIPVPSVMW---------QSEDGPLNYDIKYAFTHANQ 215

Zfish   190 LYLANARANDTGNYFCFTTINMDVSTKSIFSKAVQLTVHPDASPR-KTAPNIRVRFPAETYALSG 253
            |.:.:|..||...|.. ..||..:. |...|..|.|.|..|  |. :.||.|.|| |.:.....|
  Fly   216 LIILSADENDRKGYRA-KAINTQLG-KEESSAFVHLNVSGD--PYIEVAPEIIVR-PQDVKVKVG 275

Zfish   254 Q-TAQLECFAYRNPIPKIR--WRKVDGILPPKVGT--SVDGP---ILIIPELNFDDEGMYECEVY 310
            . ..:|:|.|...|:.::.  |.| ||:.....|.  :::.|   .|.:.:.|....|.|.|:|.
  Fly   276 TGVVELQCIANARPLHELETLWLK-DGLAVETAGVRHTLNDPWNRTLALLQANSSHSGEYTCQVR 339

Zfish   311 NSEG---RETHQGRVSVQAQPDWLQVM-SDSEVEISSELQWSCAAAGKPRPTIRWLRNGHAL--- 368
            ...|   ..:...|:.:...|.:...| :::..|...::|.:|...|:|.|.::|.||..::   
  Fly   340 LRSGGYPAVSASARLQILEPPLFFTPMRAETFGEFGGQVQLTCDVVGEPTPQVKWFRNAESVDAH 404

Zfish   369 ITQDRVEVN-NGRLKIANLALEDSGMYQCVAENKHSTIYSNAELRVQVQAPDFRLN--------- 423
            |...|..:| :..|.|..|.|:|:.|:||:|.|:.....::..|||:.:....|:.         
  Fly   405 IESGRYTLNTDNTLVIKKLILDDAAMFQCLAINEAGENSASTWLRVKTKTAKNRVKRLAQPRILR 469

Zfish   424 ------------------------------PVRKLVP----AARGGQVKMECKPRAAPKPTLFW- 453
                                          |:.:|.|    |..|....:.|:...:|.|.:.| 
  Fly   470 VRASHAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALDGKDATISCRAVGSPNPNITWI 534

Zfish   454 SRGTELLTNSTRITVTPDGILWIYNISRADEGKYTCFAENYLGKANSTGHLSVRDATKITLAPSN 518
            ...|:|:..|:|:.:...|.|.|.||...|.|.|.|...|..|......:|||...|:|...|.:
  Fly   535 YNETQLVDISSRVQILESGDLLISNIRSVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQPPVD 599

Zfish   519 ADINQGENATLQCHASHDPTMDLTFTWSLNGVPLDLEEPNGHYRRMEGKETIGDLVIVNGQLSHA 583
            ..:..|..|||||..|.||::.....|...|   ....|..:.:|: |.:..|.|.|...:.|..
  Fly   600 TTVLLGLTATLQCKVSSDPSVPYNIDWYREG---QSSTPISNSQRI-GVQADGQLEIQAVRASDV 660

Zfish   584 GTYTCTAQTVVDSAMASAKLVVRGPPGPPGGLVVTSV---NDTSVELRWSRGYDNHSPIGKYVIL 645
            |:|.|...:...:...:|:|.|...|.||..:.|..:   ...|:.:.|:.|:|.:|||.|::|.
  Fly   661 GSYACVVTSPGGNETRAARLSVIELPFPPSNVKVERLPEPQQRSINVSWTPGFDGNSPISKFIIQ 725

Zfish   646 GRS--------SQTHDWKRMRTDPANIEGNAESARVIDLRPWMDYEFQVIASNILGSGEPSMPSP 702
            .|.        ....:|   .|:.:|:..:.....:.:|:....|:|:|.|.|.:|.|.||.||.
  Fly   726 RREVSELGPVPDPLLNW---ITELSNVSADQRWILLENLKAATVYQFRVSAVNRVGEGSPSEPSN 787

Zfish   703 RAQTKEAAPTVAPSGLGGGGGNRNELIITWTPMAREYQNGDSFGYILAFRKQG---IPTWTVVKV 764
            ..:..:.||:..|.|..|...:.:|:|..|.|...|::||...||||.:|..|   :| |:...:
  Fly   788 VVELPQEAPSGPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRLFGYNNVP-WSYQNI 851

Zfish   765 PNVESSRYVYSNDSLTAYCPFEVRIKAYNKKGEGPFSQIAVVHSAEEEPTVSPRWINATALTAFE 829
            .| |:.|.....:.:| :..:.|:|.|||..|.|.:::.:.:.:.|..|...|..:...|:.:..
  Fly   852 TN-EAQRNFLIQELIT-WKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPPTNVKVEAINSTA 914

Zfish   830 IQVSWEPIQHLNINGVLRGYEIRYWRQH----EREAAADRVRTAG-------LENTARVTGLRPN 883
            .:..|.|.....|||:.:||:|:.|::.    |......|::|..       .|.||.:.||...
  Fly   915 ARCRWTPPNPQQINGINQGYKIQAWQRRLIDGEWRDIERRMKTVPPSLIDPLAEQTAILGGLEKF 979

Zfish   884 TLYHITVLAYNSAGTGPASPRTTVITKKPPPNRPPGNVSWKVDGSWVTVRWDHVKSMDNESAVLG 948
            |.|:|:||.:...|.|.||.:..|:|....|:...|.....|....|.|.|...::  :...:.|
  Fly   980 TEYNISVLCFTDPGDGVASSQVAVMTMDDVPDEVTGLHFDDVSDRSVKVLWAPPRA--SNGILTG 1042

Zfish   949 YKVLYKHEGQSALKVLEKSKTSVKLPLPKDNGYVVL-----------EIRSWGDGGDGAAHETIV 1002
            |.|.|        :|.::..|.....|..|:..:.:           ||.:|...|.|......:
  Fly  1043 YTVRY--------QVKDRPDTLKSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGSGIPKTATI 1099

Zfish  1003 SRDSGTGMMVQNSSGNWRTPCWSLLLFTALAL 1034
              .||...::.::.             |||||
  Fly  1100 --QSGVEPVLPHAP-------------TALAL 1116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cntn2NP_571521.1 Ig1_Contactin-2 33..126 CDD:143258 28/94 (30%)
I-set 34..125 CDD:254352 28/92 (30%)
Ig 128..225 CDD:299845 22/101 (22%)
IG_like 138..227 CDD:214653 21/93 (23%)
Ig 238..325 CDD:299845 24/97 (25%)
IG_like 245..324 CDD:214653 20/89 (22%)
Ig 329..413 CDD:299845 24/88 (27%)
IG_like 335..413 CDD:214653 23/81 (28%)
IG_like 429..506 CDD:214653 23/81 (28%)
Ig5_Contactin_like 434..506 CDD:143170 21/72 (29%)
I-set 511..605 CDD:254352 25/93 (27%)
Ig6_Contactin-2 525..606 CDD:143262 22/80 (28%)
FN3 615..702 CDD:238020 25/97 (26%)
FN3 714..806 CDD:238020 29/94 (31%)
FN3 817..909 CDD:238020 29/102 (28%)
FN3 917..1002 CDD:238020 18/95 (19%)
sdkNP_001284756.1 Ig 71..157 CDD:299845 28/95 (29%)
I-set 72..150 CDD:254352 27/87 (31%)
Ig 172..245 CDD:299845 17/83 (20%)
IG_like 280..356 CDD:214653 18/76 (24%)
Ig 280..343 CDD:299845 16/63 (25%)
IG_like 375..450 CDD:214653 22/74 (30%)
Ig 378..447 CDD:143165 21/68 (31%)
Ig 506..587 CDD:299845 23/80 (29%)
IG_like 506..587 CDD:214653 23/80 (29%)
I-set 592..682 CDD:254352 25/93 (27%)
Ig 595..682 CDD:299845 24/90 (27%)
FN3 686..789 CDD:238020 29/105 (28%)
FN3 798..893 CDD:238020 29/97 (30%)
FN3 901..1005 CDD:238020 29/103 (28%)
fn3 1011..1094 CDD:278470 18/92 (20%)
FN3 1108..1202 CDD:238020 5/22 (23%)
FN3 1210..1308 CDD:238020
fn3 1317..1402 CDD:278470
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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