DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pdx1 and ftz

DIOPT Version :9

Sequence 1:NP_571518.2 Gene:pdx1 / 30721 ZFINID:ZDB-GENE-990415-122 Length:246 Species:Danio rerio
Sequence 2:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster


Alignment Length:324 Identity:87/324 - (26%)
Similarity:118/324 - (36%) Gaps:113/324 - (34%)


- Green bases have known domain annotations that are detailed below.


Zfish     8 YPPNHLYKDSCAFQRHPNEDYSQ--------NPPPCLYMRQAH---------------------- 42
            |.|...|.:||.:..:..:..:|        .|||....|:|.                      
  Fly    50 YYPQESYSESCYYYNNQEQVTTQTVPPVQPTTPPPKATKRKAEDDAASIIAAVEERPSTLRALLT 114

Zfish    43 ----------------------------SVYASPLGAQDQPNLT--------DITSYNMSS---- 67
                                        .|.|||..:.||..:|        |:...::.|    
  Fly   115 NPVKKLKYTPDYFYTTVEQVKKAPAVSTKVTASPAPSYDQEYVTVPTPSASEDVDYLDVYSPQSQ 179

Zfish    68 -----RDDLAGPHLHLPQTSQTSLQSLGGYGDSLDLCGDRNRYHL----------------PFPW 111
                 ..|.|.|    |.|:.|||..|.|........|:::...:                .|.|
  Fly   180 TQKLKNGDFATP----PPTTPTSLPPLEGISTPPQSPGEKSSSAVSQEINHRIVTAPNGAGDFNW 240

Zfish   112 MKSTKSHTHAWKGQWTGPYMVEAEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELALTLSL 176
                 ||.......       :.:::||||..|||.|.|||||||.||:||:|.||:::|..|||
  Fly   241 -----SHIEETLAS-------DCKDSKRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSL 293

Zfish   177 TERHIKIWFQNRRMKWKKEEDKRRARGVDPEQDSSITSGDLKDESCVGTATLAGP--PSPLHPH 238
            :||.|||||||||||.||:    |.....||...:..:..|.......|||...|  |.|::.|
  Fly   294 SERQIKIWFQNRRMKSKKD----RTLDSSPEHCGAGYTAMLPPLEATSTATTGAPSVPVPMYHH 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdx1NP_571518.2 Homeobox 140..193 CDD:278475 37/52 (71%)
ftzNP_477498.1 FTZ 1..248 CDD:281812 35/206 (17%)
Homeobox 257..310 CDD:278475 37/52 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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