Protein Alignment pdx1 and Scr

DIOPT Version :10

• Sequence 1: NP_571518.2
• Gene: pdx1 / 30721
• ZFINID: ZDB-GENE-990415-122
• Length: 246
• Species: Danio rerio
• Sequence 2: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Alignment Length: 306
• Identity: 88/306 - (28%)
• Similarity: 114/306 - (37%)
• Gaps: 128/306 - (41%)

Zfish     8 YP--PNHLYKDSCAF--QRHPN-EDYSQNPPPCLYM-------RQAHSVYASPLGAQDQPNLTD- 59
            ||  |...|.:..|:  |.:|: .||:|..|..|.:       :|.|:..|:.:.||.|..|..
  Fly    87 YPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQQ 151

Zfish    60 ----------------------IT-------------------------SYNMSSRDDLA----G 73
                                  :|                         |.:::|..||:    .
  Fly   152 QHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDIS 216

Zfish    74 PHLHLPQTSQTSLQSL--GGYGDSL----DLCGDRNRY----------------HLP-------- 108
            |.|......::..:||  |..|.||    ...|..|.:                |.|
  Fly   217 PKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSE 281

Zfish   109 -----------------------FPWMKSTKSHTHAWKGQWTGPYMVEAE-ENKRTRTAYTRAQL 149
                                   :||||    ..|      .|...|.|. |.||.||:|||.|.
  Fly   282 SDSGNEAGSSQNSGNGKKNPPQIYPWMK----RVH------LGTSTVNANGETKRQRTSYTRYQT 336

Zfish   150 LELEKEFLFNKYISRPRRVELALTLSLTERHIKIWFQNRRMKWKKE 195
            |||||||.||:|::|.||:|:|..|.||||.|||||||||||||||
  Fly   337 LELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 382

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pdx1	NP_571518.2	Homeodomain	138..194	CDD:459649	40/55 (73%)
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	40/55 (73%)