DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdx1 and unpg

DIOPT Version :9

Sequence 1:NP_571518.2 Gene:pdx1 / 30721 ZFINID:ZDB-GENE-990415-122 Length:246 Species:Danio rerio
Sequence 2:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster


Alignment Length:261 Identity:73/261 - (27%)
Similarity:104/261 - (39%) Gaps:77/261 - (29%)


- Green bases have known domain annotations that are detailed below.


Zfish     3 REEHYYPPNHLYKDSCAFQRHPNEDYSQNPPPCLYMRQAHSVYA-----SPLGAQDQPNL----- 57
            |.:|......:::|    |.:|.....|.|.|    .||||..|     ||:    :|.|     
  Fly   194 RLQHMAAAGRMHED----QANPGMAQLQEPTP----PQAHSSPAKSGSHSPM----EPALDVGMD 246

Zfish    58 ----------TDITSYNMSSRDDLAGPHLHLPQTSQTSLQSLGGY--GDSLDLCGDRNRYHLPFP 110
                      :|| |..||.|:          ...:......|.|  .||.|...|..       
  Fly   247 EDFECSGDSCSDI-SLTMSPRN----------YNGEMDKSRNGAYTNSDSEDCSDDEG------- 293

Zfish   111 WMKSTKSHTHAWKG----QWTGPYMVEAEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELA 171
               :...|.....|    |..|  .....:::|.|||:|..||||||:||...||:|...|.::|
  Fly   294 ---AQSRHEGGGMGGKDSQGNG--SSSNSKSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIA 353

Zfish   172 LTLSLTERHIKIWFQNRRMKWKKEEDKRRARGVDPEQDSSITSGDL-KDESCVGTATLAGPPSPL 235
            .:|.|:|..:||||||||.|||:.:             :.:||..| ::.:..||..:.  |.|:
  Fly   354 TSLKLSEVQVKIWFQNRRAKWKRVK-------------AGLTSHGLGRNGTTSGTKIVV--PIPV 403

Zfish   236 H 236
            |
  Fly   404 H 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdx1NP_571518.2 Homeobox 140..193 CDD:278475 29/52 (56%)
unpgNP_477146.1 Homeobox 324..375 CDD:278475 28/50 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

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