DRSC/TRiP Functional Genomics Resources

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Protein Alignment pou2f1a and pdm2

DIOPT Version :10

Sequence 1:NP_001428269.1 Gene:pou2f1a / 30715 ZFINID:ZDB-GENE-990415-185 Length:624 Species:Danio rerio
Sequence 2:NP_723763.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster


Alignment Length:435 Identity:173/435 - (39%)
Similarity:225/435 - (51%) Gaps:97/435 - (22%)


- Green bases have known domain annotations that are detailed below.


Zfish     9 QDERSTADSSGCPADLSKNTMESAAQAQTNG-VDAQKPSAGAASGAVGGVQALLPQLNLTPAQLL 72
            ::|:..:.:...|...:...|..|.|.|.:. ::..:..|..|          .|..||....||
  Fly   517 EEEKVASVNPPQPVAFAPEEMHQALQLQLHSYIEMVRQLAPEA----------FPNPNLATQFLL 571

Zfish    73 QTQLLA-----AVQQSAGQQSSTTGASISASAATPITLSQPIQIASPQGLNLPQFVLVQPGHSIS 132
            |..|.|     |:||...||......|.|    ||:..| |::  ||....:|:       ||.|
  Fly   572 QNSLQALAQFQALQQMKQQQREDPLPSYS----TPLAKS-PLR--SPSLSPVPR-------HSKS 622

Zfish   133 TQIQPQFILSPSAQGPTGLLQPQSLLTSLPQSQTTQTSIALTTQAATP-TRKIASMPAPAAPTSK 196
            .|..|                |.|:         |..|:.:::...|| |..:...|.....|.|
  Fly   623 QQRTP----------------PNSM---------TANSLGMSSAVMTPNTPSMQQQPQLQQSTPK 662

Zfish   197 RVDGVCV-----------EEAGDLEELEQFAKNFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTI 250
            ...|:.|           ||..||||||||||.||||||||||||||||||||||||||||||||
  Fly   663 PTSGLTVASAMAKLEQSPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTI 727

Zfish   251 SRFEALNLSFKNMCKLKPLLEKWLTDAEN--MSSDCVVSSASEMSPGLSES----LNRRRKKRTS 309
            ||||||||||||||||||||:|||.||::  ..|...|.:.:.|:..||.:    |.||||||||
  Fly   728 SRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTS 792

Zfish   310 IETSIRIALERSFLEQSQKPSSEEITLIADQLSMEKEVVRVWFCNRRQKEKRINPP---SSSAAS 371
            |||::|..||::|| .:.||:||||:.::::|:|:|||:||||||||||||||||.   .|...:
  Fly   793 IETTVRTTLEKAFL-MNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKRINPSLDLDSPTGT 856

Zfish   372 PASAIKTIYSTQTAAVSSGSNTLTVNPVVPLSSSGLSNLTLSGGA 416
            |.|:....|                    |..:..:|::.:.||:
  Fly   857 PLSSHAFGY--------------------PPQALNMSHMQMEGGS 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pou2f1aNP_001428269.1 None
pdm2NP_723763.1 PHA03247 <375..675 CDD:223021 47/206 (23%)
POU 691..755 CDD:197673 60/63 (95%)
Homeodomain 787..843 CDD:459649 36/56 (64%)

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