Sequence 1: | XP_038951647.1 | Gene: | Vps41 / 306991 | RGDID: | 1560511 | Length: | 853 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001036415.2 | Gene: | lt / 3355130 | FlyBaseID: | FBgn0002566 | Length: | 841 | Species: | Drosophila melanogaster |
Alignment Length: | 845 | Identity: | 318/845 - (37%) |
---|---|---|---|
Similarity: | 491/845 - (58%) | Gaps: | 42/845 - (4%) |
- Green bases have known domain annotations that are detailed below.
Rat 14 ESTDESEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGN-ITQ 77
Rat 78 KFDVS-----PVKINQISLDESGEHMGVCSEDGKLQVFGLYSGEEFHE-TFDCPIKIVAVHPQFV 136
Rat 137 RSSCKQFVTGGKKLLLFERTWMNRWKSSVLHEGEGNIRSVKWRGHLIAWANNMGVKIFDITSKQR 201
Rat 202 I----TNVPRDDISLRPDMYPCSLCWKDAVTLIIGWGTSIKICSVKERHASEMR--DLPSRYVEI 260
Rat 261 VSQFETEFYISGLAPL-CDQLVVLSYVKEVSEKTEREYC---ARPRLDIIQPLPETCEEISSDAL 321
Rat 322 TVRGFQENECRDYHLEYSEGESLFYVVSPRDVVVAKERDQDDHIDWLLEKKKYEEALMAAEISHR 386
Rat 387 NIKRHKILEIGLAYVNHLVERGEYDMAARKCQKILGKNASLWEYEVYKFKEIGQLKAISPYLPRG 451
Rat 452 DPV-LKPLIYEMILHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAE 515
Rat 516 LYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIK 580
Rat 581 KVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEI 645
Rat 646 CQQRNFVEETVYLLSRMG--NSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPF 708
Rat 709 ITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKK 773
Rat 774 MHRTQMKGVLVDEENICESCLSPILPTDAAKPFSVVVFHCRHMFHKECLPMPSLNAPAQYCNICS 838
Rat 839 838 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps41 | XP_038951647.1 | WD40 repeat | 136..168 | CDD:293791 | 11/31 (35%) |
WD40 repeat | 173..204 | CDD:293791 | 10/34 (29%) | ||
CLH | 570..707 | CDD:128594 | 59/138 (43%) | ||
RING-H2_Vps41 | 786..840 | CDD:319604 | 14/53 (26%) | ||
lt | NP_001036415.2 | WD40 repeat | 33..81 | CDD:293791 | 17/47 (36%) |
WD40 | <42..204 | CDD:295369 | 59/162 (36%) | ||
WD40 repeat | 90..123 | CDD:293791 | 13/32 (41%) | ||
WD40 repeat | 130..168 | CDD:293791 | 14/38 (37%) | ||
CLH | 570..707 | CDD:128594 | 59/139 (42%) | ||
Clathrin | 580..708 | CDD:279031 | 55/129 (43%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166353944 | |
Domainoid | 1 | 1.000 | 388 | 1.000 | Domainoid score | I766 |
eggNOG | 1 | 0.900 | - | - | E1_KOG2066 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H69165 | |
Inparanoid | 1 | 1.050 | 519 | 1.000 | Inparanoid score | I1224 |
OMA | 1 | 1.010 | - | - | QHG54432 | |
OrthoDB | 1 | 1.010 | - | - | D103854at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0004492 | |
OrthoInspector | 1 | 1.000 | - | - | oto96567 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_103391 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR12616 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X3779 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
14 | 13.810 |