Protein Alignment raraa and EcR

DIOPT Version :9

• Sequence 1: XP_005156109.1
• Gene: raraa / 30680
• ZFINID: ZDB-GENE-980526-284
• Length: 447
• Species: Danio rerio
• Sequence 2: NP_001163061.1
• Gene: EcR / 35540
• FlyBaseID: FBgn0000546
• Length: 878
• Species: Drosophila melanogaster
• Alignment Length: 504
• Identity: 149/504 - (29%)
• Similarity: 227/504 - (45%)
• Gaps: 110/504 - (21%)

Zfish    30 LSPPSLPTLPLSGYSTPSPATIETQSTSSEEIVPSPPSPPPPPRIYKP-CFVCQDKSSGYHYGVS 93
            |||.|    .|:|||            ::|..........|.||:.:. |.||.|::|||||...
  Fly   231 LSPSS----SLNGYS------------ANESCDAKKSKKGPAPRVQEELCLVCGDRASGYHYNAL 279

Zfish    94 ACEGCKGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKESV--RNDRNKKK 156
            .|||||||||||:.|:.||.|...:.|.::...|.:||.|||:|||.|||..|.|  .|....|:
  Fly   280 TCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKR 344

Zfish   157 KEEKKPECTENYTLSPDTE------------------QMIDR------------------VRKAH 185
            :|:|..:..:..|.||.::                  :::|.                  :.|..
  Fly   345 REKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLLPDEILAKCQ 409

Zfish   186 QETFPSLC-------------QLGKYTTSNSSERRVALDVDLWDKFSELS----TKCIIKT---- 229
            ....|||.             |.|....|....||:....|..:..:::|    |:..|.|
  Fly   410 ARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQTDVSFRHITEITILTVQLI 474

Zfish   230 VEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGP 294
            |||||.||.||.:...||||||||...::::||:..||....|::.|::..:..|.....||...
  Fly   475 VEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMAD 539

Zfish   295 LTDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQADKVDVLQEPLLEALKIYVRNRRPH 359
            ..:.:..|..|:..:::|:.|..||:|| ::..||..||:|..|:.:|...::.|:||:.||
  Fly   540 NIEDLLHFCRQMFSMKVDNVEYALLTAI-VIFSDRPGLEKAQLVEAIQSYYIDTLRIYILNR--- 600

Zfish   360 KPH--------MFPKMLMKITDLRSISAKGAERVITLKM---EIP---------GSMPPLIQEML 404
              |        .:.|:|..:|:||::..:.||...:||:   ::|         .::||.:|..|
  Fly   601 --HCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIWDVHAIPPSVQSHL 663

Zfish   405 ----ENSEGLESSSGAQGSRASATTPG----SCSPSLSPNSAQSSPPTQ 445
                |.:|.||.:...:.|...|.|.|    |.|.|.:..:||..|..|
  Fly   664 QITQEENERLERAERMRASVGGAITAGIDCDSASTSAAAAAAQHQPQPQ 712

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
raraa	XP_005156109.1	NR_DBD_RAR	72..156	CDD:143522	42/86 (49%)
		NR_LBD_RAR	177..406	CDD:132735	76/291 (26%)
EcR	NP_001163061.1	NR_DBD_EcR	261..351	CDD:143535	43/89 (48%)
		NR_LBD_EcR	420..652	CDD:132736	67/237 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170593371
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.840