DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l1cama and Nrg

DIOPT Version :9

Sequence 1:NP_571436.2 Gene:l1cama / 30634 ZFINID:ZDB-GENE-990415-10 Length:1271 Species:Danio rerio
Sequence 2:NP_001245581.1 Gene:Nrg / 31792 FlyBaseID:FBgn0264975 Length:1309 Species:Drosophila melanogaster


Alignment Length:1338 Identity:379/1338 - (28%)
Similarity:599/1338 - (44%) Gaps:134/1338 - (10%)


- Green bases have known domain annotations that are detailed below.


Zfish    18 ALLLPLLLLAVALKPGNTTINIPSRYKIRDLKSPPVITAQP---------KSVTTFSADDITLTC 73
            |||:.||....|...||               .||.||.||         ......|.:...:.|
  Fly    10 ALLVALLCAGSAESKGN---------------RPPRITKQPAPGELLFKVAQQNKESDNPFIIEC 59

Zfish    74 DATGNPPPTFRWVKDGVEFD-PSKDPDLSVSRDSGTFSLTAKDGPIHQYQGRYNCYASNELGTAV 137
            :|.|.|.|.:.|:|:|.:|| .:.|..:......||..:|.   |..:.:|.|.|:||||.|||.
  Fly    60 EADGQPEPEYSWIKNGKKFDWQAYDNRMLRQPGRGTLVITI---PKDEDRGHYQCFASNEFGTAT 121

Zfish   138 SNEARIVTENTPTLQKEKIITKKVEEGESVVLPCNPPNGTVAPVIHWM-----DKKLRHIQQNER 197
            ||...:........:.|...|.:..|||..:|.|..|:|..:|.::||     |..::.| .|.|
  Fly   122 SNSVYVRKAELNAFKDEAAKTLEAVEGEPFMLKCAAPDGFPSPTVNWMIQESIDGSIKSI-NNSR 185

Zfish   198 VIQGRDGNLYFSHATVADSRDD--YTCNIQFPSARVIKLKEPIKLTVSSSN-SVVRNRRPQMMRP 259
            :....:|||:||:.|..|:..|  |.|:.........|:...:.|.|.... |..:|:.|. :|.
  Fly   186 MTLDPEGNLWFSNVTREDASSDFYYACSATSVFRSEYKIGNKVLLDVKQMGVSASQNKHPP-VRQ 249

Zfish   260 TGSSSSYLVLSGQNLELECIVQGLPSPSIQWIRKDG--VLSESRTTKDSNDRVLRFQNISETDGG 322
            ..|....|.|.|:.:||.||..|.|.|...| .|||  :....|.|:....:.|..:..:..|.|
  Fly   250 YVSRRQSLALRGKRMELFCIYGGTPLPQTVW-SKDGQRIQWSDRITQGHYGKSLVIRQTNFDDAG 313

Zfish   323 EYQCTATNPQG-MSTHTYRVTVEAAPYWIKEPKSQLYAPGETVKLECKADGIPKPEVTWSINGIL 386
            .|.|..:|..| ..:.:..:.|.:.||:.|||:....|..|.|..||:|.|:|:|:::|..||..
  Fly   314 TYTCDVSNGVGNAQSFSIILNVNSVPYFTKEPEIATAAEDEEVVFECRAAGVPEPKISWIHNGKP 378

Zfish   387 LSDIDPDPRRSVKHGVLTLKNVELSDTAVFQCKAASKHGSVLINAYVYVIELPPQILTEDGLMYS 451
            :....|:|||:|....:.:.|:...||..:.|.|.:..|.|..:.|:.|...||.| :|.....|
  Fly   379 IEQSTPNPRRTVTDNTIRIINLVKGDTGNYGCNATNSLGYVYKDVYLNVQAEPPTI-SEAPAAVS 442

Zfish   452 VAEGQTTELACETFGSPRPNVTW-EGESWGALVANQRMIQLSDGSLQISNASLNDSGQYTCTVNN 515
            ..:|:...:.|...|||:|.|.| ...:|  |...:..:| ::|.|:|.:.:.:|:|:|||...|
  Fly   443 TVDGRNVTIKCRVNGSPKPLVKWLRASNW--LTGGRYNVQ-ANGDLEIQDVTFSDAGKYTCYAQN 504

Zfish   516 --SKITITAELDVLNKTVIVKPPLALRIQRGKPATLTCEYQVDSRQDLPQVQWRKNTQKLTESSD 578
              .:|.....|.|...|.|.:.|....:..|:.||..|....|...:: ::.|.|:.|.:...:.
  Fly   505 KFGEIQADGSLVVKEHTRITQEPQNYEVAAGQSATFRCNEAHDDTLEI-EIDWWKDGQSIDFEAQ 568

Zfish   579 SDKYMIDESTLIIPEVEEEDEGTYTCEVITTLDMAKASGSITIVDRPDPPSLIQMTEPKERRVTL 643
            ......::::|.|.:..|.|.|.|||...|.||.|.|..::.:.|.|:.|.|..:|...: :..:
  Fly   569 PRFVKTNDNSLTIAKTMELDSGEYTCVARTRLDEATARANLIVQDVPNAPKLTGITCQAD-KAEI 632

Zfish   644 SWTPGADHNSPVLEYLIEFEETGSDRKEWE-ELSRVSGSSQRATLPLKPFISYRFRVIAINEIGK 707
            .|....|:.||:|.|.|:| .|......|: ...:|..:.....:.:.|:.:|.|||||.|:||.
  Fly   633 HWEQQGDNRSPILHYTIQF-NTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGA 696

Zfish   708 SDPSMVTEAYSTPAAPPDSNPEGVRSDSDEPGTLVITWKEMDRRSFNGPDFHYKVMWRKVLGSGP 772
            |.||..:::.:|....|..||:.|.....||..|||:|..|.....|.|:|||.|.|::.:.:. 
  Fly   697 SPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAA- 760

Zfish   773 SWHTKDI---TSPPFVVTDVGNFSAFDIKVQAVNEMGE-GPEPKSIIGYSGEDYPLEAPLDVGLI 833
            :|...:|   .....|:.|...|..:.|||.|:|:.|| ....:.::||||||.||:||.:..:.
  Fly   761 AWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDRPLDAPTNFTMR 825

Zfish   834 LI-NSTAIKVTWAAVNRETVRGRLQGYKIYLTYLGPKGQHLRREPKTTFVVTTDSNEEKKVLGDL 897
            .| :||:..:.|..|:.|:|||..:||||. |:...:|:...||      :....:....::...
  Fly   826 QITSSTSGYMAWTPVSEESVRGHFKGYKIQ-TWTENEGEEGLRE------IHVKGDTHNALVTQF 883

Zfish   898 QPFSHYNLAVSVFNYKGEGPQSESILFFTPEGVPGPPSSLMLDSPSETEMTVHWTPPNQPNGNLI 962
            :|.|.....:..:|.:..||.|..|.|.||||||.|...|.......:...:||..|..|||.|.
  Fly   884 KPDSKNYARILAYNGRFNGPPSAVIDFDTPEGVPSPVQGLDAYPLGSSAFMLHWKKPLYPNGKLT 948

Zfish   963 GYILQHQQL---------DNDASLMQVVKISDPTASHYKLK-LDPHSRYRFYLRGYTAIGEG--- 1014
            ||.:.::::         :.|.      .|:||..:..|:. |.|:|:||..:...|.:|||   
  Fly   949 GYKIYYEEVKESYVGERREYDP------HITDPRVTRMKMAGLKPNSKYRISITATTKMGEGSEH 1007

Zfish  1015 ---LPIIKDGATTLDPVPPS----DISISTGETSVNLTWV-SKERQRNVEFF-IHYLRKDGPDKW 1070
               ...:|| |..:.|..||    .:....|.....:.|: |.|......|| :|.::  |..:|
  Fly  1008 YIEKTTLKD-AVNVAPATPSFSWEQLPSDNGLAKFRINWLPSTEGHPGTHFFTMHRIK--GETQW 1069

Zfish  1071 -EKSEKVNSTQSFYTLHGLQPGSQYRLKI-----DFNNTKWEQEI--QTAGARVMEVKSGFVTES 1127
             .::|:.||  .:..:.||.|.:.|..::     .||.....|||  .|....:|..........
  Fly  1070 IRENEEKNS--DYQEVGGLDPETAYEFRVVSVDGHFNTESATQEIDTNTVEGPIMVANETVANAG 1132

Zfish  1128 WFIGLISALVLLLLVLLILCFIKRSKGGKYSVKEK----------EEGQIDSEARPMNNEAFGEY 1182
            ||||::.||..::::.:|:|.|:|::||||.|.::          |||.....::|::|::.|. 
  Fly  1133 WFIGMMLALAFIIILFIIICIIRRNRGGKYDVHDRELANGRRDYPEEGGFHEYSQPLDNKSAGR- 1196

Zfish  1183 RSLESDNEEKRTASQPSLCE----DSKLCTD------------DGLDDYANSNSVQTEVIMDESL 1231
            :|:.|.|:....:...|:.|    |:.:.|.            ..|.........|.:....:..
  Fly  1197 QSVSSANKPGVESDTDSMAEYGDGDTAVATAAARAAAAARSKLTSLPTSTQQQQQQQQQQQQQQE 1261

Zfish  1232 ASQSSGVRDVPDAETQESSPLNPATAISHHGLPNSAAL 1269
            ..||:....||.......||...:|:.|....|.|..|
  Fly  1262 QPQSTSASTVPLISLASPSPSPSSTSNSPTAAPPSYEL 1299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l1camaNP_571436.2 Ig_L1-CAM_like 69..144 CDD:319299 27/75 (36%)
Ig 147..241 CDD:386229 27/100 (27%)
Ig 274..344 CDD:386229 20/72 (28%)
Ig 361..436 CDD:386229 24/74 (32%)
IG_like 450..526 CDD:214653 23/78 (29%)
Ig 547..616 CDD:319273 19/68 (28%)
FN3 625..717 CDD:238020 28/92 (30%)
FN3 726..817 CDD:238020 29/94 (31%)
FN3 825..926 CDD:238020 27/101 (27%)
FN3 931..1024 CDD:238020 29/108 (27%)
FN3 1027..>1098 CDD:238020 19/77 (25%)
Bravo_FIGEY 1150..1234 CDD:372781 21/109 (19%)
NrgNP_001245581.1 Ig 55..128 CDD:299845 27/75 (36%)
IG_like 57..127 CDD:214653 27/72 (38%)
Ig 135..214 CDD:299845 26/79 (33%)
IG_like 141..216 CDD:214653 25/75 (33%)
ig 251..332 CDD:278476 24/81 (30%)
I-set 339..427 CDD:254352 30/87 (34%)
Ig 354..427 CDD:299845 24/72 (33%)
I-set 432..517 CDD:254352 26/88 (30%)
Ig 446..517 CDD:299845 22/73 (30%)
I-set 522..611 CDD:254352 23/89 (26%)
ig 525..609 CDD:278476 22/84 (26%)
FN3 613..707 CDD:238020 29/95 (31%)
FN3 716..807 CDD:238020 29/91 (32%)
fn3 817..905 CDD:278470 24/94 (26%)
FN3 917..1004 CDD:238020 24/92 (26%)
FN3 1041..1111 CDD:238020 17/73 (23%)
Bravo_FIGEY 1155..>1221 CDD:290593 17/66 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D208655at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
32.880

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