DRSC/TRiP Functional Genomics Resources

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Protein Alignment bmp2b and scw

DIOPT Version :9

Sequence 1:NP_571435.1 Gene:bmp2b / 30632 ZFINID:ZDB-GENE-980526-474 Length:411 Species:Danio rerio
Sequence 2:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster


Alignment Length:393 Identity:97/393 - (24%)
Similarity:168/393 - (42%) Gaps:67/393 - (17%)


- Green bases have known domain annotations that are detailed below.


Zfish    53 ELRLLNMFGL----KRKPTPSKSAVVPQYMLDLYYMHSENDDP----NIRRPRS-----TMGKHV 104
            ::.::::..|    :|:..|:......:::|::|...||:.:|    :.|..||     .:....
  Fly    39 QMEMIDILDLGDRPRRQAEPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILISNED 103

Zfish   105 ERAASRANTIRSFHHEEAFEALSSLKGKTTQQFFFNLTSIPGEELISAAELRIFRDQVLGDASTS 169
            .:..:..|:|.:|......|.|.:   :......||...:|.:..:..|.|||::...|.|...:
  Fly   104 RQEIASCNSILTFSSRLKPEQLDN---ELDMHITFNTNDVPVDLSLVQAMLRIYKQPSLVDRRAN 165

Zfish   170 GFHRINIYEVFRPALAPSKEPLTRLLDTRLVQDSHTRWESFDVGSAVARWARESQHNHGLLVEVL 234
              ..:::|.    .|...::...|:|.:.....|...|..|::...:..|.    ||.||     
  Fly   166 --FTVSVYR----KLDNRQDFSYRILGSVNTTSSQRGWLEFNLTDTLRYWL----HNKGL----- 215

Zfish   235 HPKESEVSEEAESNRRKHVRVS----------RSLHADEDSWAQARPLLVTYSHDGQGTAVLHSN 289
                         .||..:|:|          ..|...:.|.....|.:|.|.:..:....:...
  Fly   216 -------------QRRNELRISIGDSQLSTFAAGLVTPQASRTSLEPFIVGYFNGPELLVKIQKL 267

Zfish   290 R-----EKRQARRGQKPRRK------HHQRSNCRRHALYVDFSDVGWNEWIVAPPGYHAFYCHGE 343
            |     |||:|..|..|...      :....:|.|....|||.::..:.|::||..:.|::|.|.
  Fly   268 RFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQSCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGG 332

Zfish   344 CPFPLPDHLNSTNHAIVQTLVNSVNSNIPKACCIPTELSPISLL-YLDEYEKVILKNYQDMVVEG 407
            |.|||...:|:|||||||||::....::||.||:||.|..|::| ||:| :.:.|..||..|.:.
  Fly   333 CNFPLGTKMNATNHAIVQTLMHLKQPHLPKPCCVPTVLGAITILRYLNE-DIIDLTKYQKAVAKE 396

Zfish   408 CGC 410
            |||
  Fly   397 CGC 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bmp2bNP_571435.1 TGFb_propeptide 49..276 CDD:366248 45/245 (18%)
TGF_beta_BMP2_like 311..411 CDD:381638 44/101 (44%)
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 45/245 (18%)
TGFB 300..400 CDD:214556 44/101 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X157
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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