DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fli1 and pnt

DIOPT Version :9

Sequence 1:XP_021323256.1 Gene:fli1 / 30619 ZFINID:ZDB-GENE-980526-426 Length:474 Species:Danio rerio
Sequence 2:NP_524461.2 Gene:pnt / 42757 FlyBaseID:FBgn0003118 Length:718 Species:Drosophila melanogaster


Alignment Length:671 Identity:138/671 - (20%)
Similarity:205/671 - (30%) Gaps:340/671 - (50%)


- Green bases have known domain annotations that are detailed below.


Zfish    16 VRHHRHHEQEALSVVSEDQSLF---EPPYAAAAPLPKTDMTASGTQDYGQTHKI-NPIPPQQEWI 76
            :|..::.:...||.:.|.:::|   ||.:..     |...:.|...|:..:.:: ..:||.....
  Fly    95 MRLKKNRKVTFLSSLVESKNIFIKEEPIHGC-----KDLCSLSDISDHEASLEVPTALPPLTPGT 154

Zfish    77 NQPVRVNVKREYDHINGSRESPVDCSVGKCNKMVGGTEASQMNYTGYMDEKCAPPPNMTTNERRV 141
            |:.|...:|..:    .|.|..|                          :||    |:|.:.|. 
  Fly   155 NRKVNEVLKASF----ASWEKEV--------------------------QKC----NITKDPRE- 184

Zfish   142 IVPAGEYCINPSLWSPDHVRQWLDWAIKEYGLQEIDTAMFHSTDGKELCKMSKDDFLRLTSVYNT 206
                         |:.:||..||:||..|:.|..::...|:...|:.:..:.|:.||.:|..:..
  Fly   185 -------------WTEEHVIYWLNWAKNEFSLVSMNLDPFYKMKGRAMVDLGKEKFLAITPPFTG 236

Zfish   207 EVLLSHLNYLRE-----------------------------------------SSSSIS------ 224
            ::|..||:.|::                                         ::|||:      
  Fly   237 DILWEHLDILQKDCEKPNEDIVHGNSFESATTASVCGSDHQVANYPNETHANSNNSSINSRLSMD 301

Zfish   225 -----------------------YNTPSHAD-------------QSPRLAAKDDASYD------- 246
                                   |||.:..|             |.|.:.....||.:       
  Fly   302 YVTSAGNSDNKNFHRATPHSHNGYNTSNTHDRINNSTPPQQQQSQQPTVNGSGSASSNNNNSMLP 366

Zfish   247 -AVRR----------------------TGWSNNMHSG---------------------------- 260
             ||::                      :|.|||.::|                            
  Fly   367 PAVQQSNNENNNTSSSNTNNSSNNNNNSGGSNNSNAGSNNNNNNNNNINFMAAAAIFQHHLKEEP 431

Zfish   261 ----------------KGSPTVVS-----------------------------------QSVSKN 274
                            :..||.:|                                   .::|..
  Fly   432 GTQNGNIGGYGGGSNSQNDPTDLSSYGLPAHLAAYGGGSGSGPTGGRSSGGGGDESDYHSTISAQ 496

Zfish   275 PDQPR--------------------------------------------PQPDPY-----QILGP 290
            ..|.:                                            |:..||     |.:||
  Fly   497 DHQSQQSSGGNGSGGASGGSTGNSNGYLDSSSEFYGSYAGRNRFHDGYPPEFTPYDAQSFQSMGP 561

Zfish   291 TSSRL---------ANP---------------------------GSGQIQLWQFLLELLSDSANA 319
            ..:.:         .:|                           |||.|||||||||||.|....
  Fly   562 QPTAMDQWGAAHAHQHPAAYMSTLGLDKGLLGGYTTQGGVPCFTGSGPIQLWQFLLELLLDKTCQ 626

Zfish   320 GCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKF-- 382
            ..|:|.|...|||:|||||||||||.||:||.|||:||||.|||||||||:.|..||||.|:|  
  Fly   627 SFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVC 691

Zfish   383 DFHGIAQALQPHPTESTMYKY 403
            |.    |.|..|..|..:.||
  Fly   692 DL----QNLVGHTPEELVAKY 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fli1XP_021323256.1 SAM_PNT-FLI-1 131..226 CDD:188883 25/164 (15%)
ETS 302..385 CDD:197710 57/84 (68%)
pntNP_524461.2 SAM_PNT-ETS-1,2 179..250 CDD:188879 21/84 (25%)
ETS 609..693 CDD:197710 56/83 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3806
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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