DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bmp4 and scw

DIOPT Version :9

Sequence 1:NP_571417.1 Gene:bmp4 / 30612 ZFINID:ZDB-GENE-980528-2059 Length:400 Species:Danio rerio
Sequence 2:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster


Alignment Length:403 Identity:102/403 - (25%)
Similarity:164/403 - (40%) Gaps:80/403 - (19%)


- Green bases have known domain annotations that are detailed below.


Zfish    42 QSHELLRDFEATLLHMFGLQRRPR----PSHSAVVPQYLLDLYRLQSGELEEAGAQHV----SFD 98
            |...|....|  ::.:..|..|||    |:......::||::|...|.:.|.....|.    |.|
  Fly    32 QKRPLSEQME--MIDILDLGDRPRRQAEPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLD 94

Zfish    99 -------YPERSTSRANTVRGFHHEEHLEELQSDGSQETPLRFVFNLSSIPEDELISTAELRVYR 156
                   ...:..:..|::..|......|:|.:    |..:...||.:.:|.|..:..|.||:|:
  Fly    95 DDILISNEDRQEIASCNSILTFSSRLKPEQLDN----ELDMHITFNTNDVPVDLSLVQAMLRIYK 155

Zfish   157 QQIDDAFSDPDQTGDHGLHRINIYEVLKAPREGQLITQLLDTRLVRHNTSKWESFDVSPAVLRWT 221
            |        |..........:::|.  |.........::|.:.....:...|..|:::..:..|.
  Fly   156 Q--------PSLVDRRANFTVSVYR--KLDNRQDFSYRILGSVNTTSSQRGWLEFNLTDTLRYWL 210

Zfish   222 QEKRSNHGLAVEVVQMKRNPVQKGRHVRVSRSVHPL---------PDEEWDQLRPLLVTFGHDGK 277
            .    |.||            |:...:|:|.....|         |......|.|.:|  |:...
  Fly   211 H----NKGL------------QRRNELRISIGDSQLSTFAAGLVTPQASRTSLEPFIV--GYFNG 257

Zfish   278 SHPLTRRAKRSPKQRGRKRN--------------------RNCRRHALYVDFSDVGWNDWIVAPP 322
            ...|.:..|...|:...||.                    ::|.|....|||.::..::|::||.
  Fly   258 PELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQSCERLNFTVDFKELHMHNWVIAPK 322

Zfish   323 GYQAYYCHGECPFPLADHLNSTNHAIVQTLVNSVNTNIPKACCVPTELSAISML-YLDETDRVVL 386
            .::||:|.|.|.|||...:|:|||||||||::....::||.|||||.|.||::| ||:| |.:.|
  Fly   323 KFEAYFCGGGCNFPLGTKMNATNHAIVQTLMHLKQPHLPKPCCVPTVLGAITILRYLNE-DIIDL 386

Zfish   387 KNYQEMVVEGCGC 399
            ..||:.|.:.|||
  Fly   387 TKYQKAVAKECGC 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bmp4NP_571417.1 TGFb_propeptide 35..272 CDD:279078 48/253 (19%)
TGFB 300..400 CDD:214556 48/101 (48%)
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 46/248 (19%)
TGFB 300..400 CDD:214556 48/101 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X157
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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