DRSC/TRiP Functional Genomics Resources

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Protein Alignment sox11b and Sox15

DIOPT Version :9

Sequence 1:NP_571412.1 Gene:sox11b / 30603 ZFINID:ZDB-GENE-980526-466 Length:368 Species:Danio rerio
Sequence 2:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster


Alignment Length:409 Identity:99/409 - (24%)
Similarity:173/409 - (42%) Gaps:105/409 - (25%)


- Green bases have known domain annotations that are detailed below.


Zfish    31 PVP------PKPDWCKTA-TGHIKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLK 88
            |:|      |.....|:| ...|:|||||||||:||||:|:.:::||:|||::||.|||:|:.|.
  Fly   193 PLPADLKYRPGGTQSKSAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLT 257

Zfish    89 DSEKIPFIREAERLRLQHMADYPDYKYRPKK-------------KPKLDSSSKPAV---QSPEKI 137
            ..::.|::.||||||:.||.::|:|||||::             |.:.:||..|..   :|..|:
  Fly   258 PQDRRPYVEEAERLRVIHMTEHPNYKYRPRRRKQSKLRAMQPGGKEQSESSPNPGTGGSKSNPKL 322

Zfish   138 SKSVKAAAGKK---------CAKLK----PSKPGNI-------TARASTQDCRFNYVFTNLKVTK 182
            :....|.|...         |....    .|.||.:       |...|:.||     ::|...|:
  Fly   323 ATPPLATASSSYTTPTDESTCNSTNQNHGQSTPGGLYEQPLKPTYSPSSVDC-----YSNADSTE 382

Zfish   183 SIK---------------------------RELTD----------DEDDDDDDDDDDDEEDDYED 210
            .|:                           ::||.          .|.....::.:...:...:.
  Fly   383 QIESLAANCPPALLNESSPTGGGYDNSLLLKKLTKPSPSRAAKSRQEKLAKSEEKNKGSQSQGQS 447

Zfish   211 EEHIRLHNVPASPTLSSAAESEHGASMYEESRHTSATPGSRLFYNFKNITKQSAAYPASVSPASS 275
            ::.|.....|.:|| |.|..:..|  ||       .|..:|...:..:..|.:...|.|||...:
  Fly   448 QQGIYAATYPLAPT-SVAVVAARG--MY-------VTCNNRGLLDHGHSVKGTFYPPVSVSEDDN 502

Zfish   276 FRSVSSSSSSSSEDSDDLLVDFSLNLAAG--------SHTADLGNTSGNLCLSLVDKDLDSFSEG 332
            ..|:.:|.|:..:..:  :|..:.:.:.|        |:|..:.:..|||.||:.:...:.:...
  Fly   503 STSMRNSISALQQHCN--VVTSTPSSSGGTMPTSEMSSYTVSMADNCGNLRLSMNELSGNEYLPS 565

Zfish   333 SLGSHFEFPDYCTPELSEM 351
            :.....::.|:...:.::|
  Fly   566 ANAYGMQYEDFLRYQSNDM 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sox11bNP_571412.1 SOX-TCF_HMG-box 45..112 CDD:238684 36/66 (55%)
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 39/70 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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