DRSC/TRiP Functional Genomics Resources

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Protein Alignment sox11a and Sox15

DIOPT Version :9

Sequence 1:NP_571411.1 Gene:sox11a / 30602 ZFINID:ZDB-GENE-980526-395 Length:354 Species:Danio rerio
Sequence 2:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster


Alignment Length:379 Identity:98/379 - (25%)
Similarity:166/379 - (43%) Gaps:91/379 - (24%)


- Green bases have known domain annotations that are detailed below.


Zfish    41 IKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADY 105
            |:|||||||||:||||:|:.:::||:|||::||.|||:|:.|...::.|::.||||||:.||.::
  Fly   215 IRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEH 279

Zfish   106 PDYKYRPKKK------------------------------PKL----------------DSSS-- 122
            |:|||||:::                              |||                |.|:  
  Fly   280 PNYKYRPRRRKQSKLRAMQPGGKEQSESSPNPGTGGSKSNPKLATPPLATASSSYTTPTDESTCN 344

Zfish   123 -------------------KPS-APSPEKCSKTSKSSKKCPKLKAN-----KTGSKSSSHGYGDE 162
                               ||: :||...|...:.|:::...|.||     ...|..:..||.:.
  Fly   345 STNQNHGQSTPGGLYEQPLKPTYSPSSVDCYSNADSTEQIESLAANCPPALLNESSPTGGGYDNS 409

Zfish   163 YAFKS-TKVSKTVHIKSEFTDEDDDDDSEEDSRVRVKEEEEDPIRAYNVAKVPASPTLSSSTESE 226
            ...|. ||.|.:...||.   ::....|||.::....:.:..  :....|..|.:||..:...:.
  Fly   410 LLLKKLTKPSPSRAAKSR---QEKLAKSEEKNKGSQSQGQSQ--QGIYAATYPLAPTSVAVVAAR 469

Zfish   227 GASMYEEVRNNRLYYNFKNITKQSTMY-PASVS-PASSRSVSTSSSSSEDADDLLFDFSLNFASS 289
            |  ||....|..|..:..::  :.|.| |.||| ..:|.|:..|.|:.:...:::.....:...:
  Fly   470 G--MYVTCNNRGLLDHGHSV--KGTFYPPVSVSEDDNSTSMRNSISALQQHCNVVTSTPSSSGGT 530

Zfish   290 AQSSELGS------QNPGNLSLSLVDKELESFSEGSLGSHFEFPDYCTPELSEM 337
            ..:||:.|      .|.|||.||:.:.....:...:.....::.|:...:.::|
  Fly   531 MPTSEMSSYTVSMADNCGNLRLSMNELSGNEYLPSANAYGMQYEDFLRYQSNDM 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sox11aNP_571411.1 SOX-TCF_HMG-box 40..107 CDD:238684 36/65 (55%)
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 39/69 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.910

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