DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pax7a and sv

DIOPT Version :9

Sequence 1:NP_571400.1 Gene:pax7a / 30587 ZFINID:ZDB-GENE-990415-201 Length:507 Species:Danio rerio
Sequence 2:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster


Alignment Length:633 Identity:175/633 - (27%)
Similarity:248/633 - (39%) Gaps:230/633 - (36%)


- Green bases have known domain annotations that are detailed below.


Zfish    34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRP 98
            |.|.||||||||:||||||:.:|.:|||:||:|:|||.||||||||||||||||.||.||||.:.
  Fly   175 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETGSFKA 239

Zfish    99 GAIGGSKPRQVATPDVEKRIEEYKRENPGMFSWEIRDKLLKDGVCDRGTVPSGEASSVSSISRVL 163
            |.||||||: ||||.|...|..||||||.||:|||||:||.:.:|.:..||     |||||:|::
  Fly   240 GVIGGSKPK-VATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVP-----SVSSINRIV 298

Zfish   164 RARFGKK---------------------------------------------------------- 170
            |.:..:|                                                          
  Fly   299 RNKAAEKAKHVHHHQQHHVSQSLGGGHIATESVDSSTGTIGEPQPPTSNSSANSVNTNVSASASV 363

Zfish   171 --------------------DDDDECDKKDEDGEKKTK-HSIDGIL----GDKGNRTDEGSDVES 210
                                .:.:|....:...|::|. :||:|||    |...:..:..|.|.:
  Fly   364 HASIPTSGTDSVQVSVGHINANSNETTHINSTAEQRTTGYSINGILGIQHGHHSHNNNNNSSVNN 428

Zfish   211 EPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLT-----EARVQVWFSN 270
            ..:.....|::|.             :|.:..|..:|::..:..:|.:::     :....:|   
  Fly   429 NNNTESSCKRKRI-------------EAHDENHDTNIHSDNDDGKRQRMSTYSGDQLYTNIW--- 477

Zfish   271 RRARWRKQAGANQLAAFNHLL--PGGFPPT------GMPTLP------------TYQLPESTYPS 315
             ..:|..:.....||...:|.  .|..|.|      |..|.|            |..|.:|.   
  Fly   478 -SGKWCIKDDHKLLAELGNLTASTGNCPATYYEASNGFSTTPISGSGATASGNDTSMLYDSI--- 538

Zfish   316 TTLSQDGSSTLHRP-----------QPLPPSSMHQGGLSADS----------------GSAYGLS 353
            ||:||..|| ::.|           .||.|.|||:..|||:|                |:...::
  Fly   539 TTISQTQSS-IYTPAIGPSIGTGSLTPLVPISMHEMKLSANSIQEQTVPPFYTALAFDGNYTSMT 602

Zfish   354 S--NRHTFSSYSETFMSPTASSNHMNPVSNGLSP--------QVMSILSN-----------PSAV 397
            |  |..:........|..::.||.:.|:|..:.|        :|...|:|           |...
  Fly   603 SLENCSSLVGQEHIVMPESSDSNTLCPISTRIVPDITETNSTRVKEPLTNSDGCSEDNNKEPEKS 667

Zfish   398 PSQPQHDFSISP-LH------------GGLEASN------PISAS----------CSQRSDPIKS 433
            .|....|...|| ||            ..|.||.      |:..|          ...|||...:
  Fly   668 NSSQSSDHIASPHLHHIGEEQLRGNRRSNLNASTHPSSLIPLQPSGGSSLLNINPSENRSDVELN 732

Zfish   434 VDS---LASTQSYCPP--TYSA--------TSYSVDPVTAGYQYSQYG 468
            :.:   |.||.:..|.  .|||        :.|:.:|.     |:|||
  Fly   733 LSNNVGLYSTPTVLPSFNHYSAGCSSVVPGSDYAYNPA-----YTQYG 775

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pax7aNP_571400.1 PAX 34..166 CDD:238076 86/131 (66%)
Homeobox 223..276 CDD:278475 5/57 (9%)
Pax7 343..386 CDD:289156 12/68 (18%)
svNP_524633.3 PAX 175..299 CDD:128645 85/129 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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