DRSC/TRiP Functional Genomics Resources

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Protein Alignment pax7a and Poxm

DIOPT Version :9

Sequence 1:NP_571400.1 Gene:pax7a / 30587 ZFINID:ZDB-GENE-990415-201 Length:507 Species:Danio rerio
Sequence 2:NP_001036687.1 Gene:Poxm / 40990 FlyBaseID:FBgn0003129 Length:370 Species:Drosophila melanogaster


Alignment Length:440 Identity:149/440 - (33%)
Similarity:186/440 - (42%) Gaps:121/440 - (27%)


- Green bases have known domain annotations that are detailed below.


Zfish    36 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGA 100
            |.||||||||:|||||||..|.:|||:|..|||||.||||||||||||||||.||.|||||.|||
  Fly    11 GEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA 75

Zfish   101 IGGSKPRQVATPDVEKRIEEYKRENPGMFSWEIRDKLLKDGVCDRGTVPSGEASSVSSISRVLRA 165
            ||||||| |.||.|...|.|.|:.:||:|:|||||:||.:|:||:..||     |||||||:||.
  Fly    76 IGGSKPR-VTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVP-----SVSSISRILRN 134

Zfish   166 RFGKKDDDDECDKKDEDGEKKTKHSIDGILGDKGNRTDEGSDVESEPDLPLKRKQRRSRTTFTAE 230
            :.|..            |.:.|..::.|.....|     |..|.|...      |....:.....
  Fly   135 KLGSL------------GHQHTPGTVMGSGSSSG-----GGSVSSNGG------QNNGTSASNNI 176

Zfish   231 QLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGF 295
            .|..|.......|:|..:...:.|...                     |.|:.:.|..|      
  Fly   177 NLSNLGNPGGGPHHPHHHHHHQSAAAA---------------------ASAHHVHAHAH------ 214

Zfish   296 PPTGMPTLPTYQLPESTYPSTTLSQDGSSTLHRPQPLPPSSMHQGGLSADSGSAYGLSSNRHTFS 360
                    ....|..|.|...:.:...|.......|.||    ||        |.|..|..|...
  Fly   215 --------AHAHLYNSIYQPYSAAAAYSMKTPCGSPSPP----QG--------AGGQGSVPHPHQ 259

Zfish   361 SYSETFMSPTASSNHMNPVSNGLSPQVMSILSNPSAVPSQPQHDFSISPLHGGLEASNPISASCS 425
            ..|   ::..|::.|. |.|:.:|    .||::..||                     .:.||| 
  Fly   260 LRS---VAAAAAAAHW-PSSHSVS----DILAHHQAV---------------------ALRASC- 294

Zfish   426 QRSDPIKSVDSLASTQSYCPPTYSATSYSVDPV--TAGYQYSQYGQTAVD 473
            |....:..:..:.||.|..|.|.|       ||  |||      ||..:|
  Fly   295 QVGVGVGGMGGMGSTVSPLPMTPS-------PVAGTAG------GQPLLD 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pax7aNP_571400.1 PAX 34..166 CDD:238076 90/129 (70%)
Homeobox 223..276 CDD:278475 5/52 (10%)
Pax7 343..386 CDD:289156 10/42 (24%)
PoxmNP_001036687.1 PAX 10..133 CDD:128645 88/127 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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