DRSC/TRiP Functional Genomics Resources

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Protein Alignment ldb1b and Chi

DIOPT Version :9

Sequence 1:NP_001349250.1 Gene:ldb1b / 30576 ZFINID:ZDB-GENE-990415-135 Length:411 Species:Danio rerio
Sequence 2:NP_726403.2 Gene:Chi / 37837 FlyBaseID:FBgn0013764 Length:596 Species:Drosophila melanogaster


Alignment Length:429 Identity:250/429 - (58%)
Similarity:305/429 - (71%) Gaps:54/429 - (12%)


- Green bases have known domain annotations that are detailed below.


Zfish     2 SVGGCACPGCSSKSFKLYSPKEPPNGSAFPPF-----HPGTMLDRDVGPTPMYPPTYLEPGIGRH 61
            ||||            .::|..|.:     ||     ||  |:.   ||..|   ..::.|..||
  Fly   189 SVGG------------QFNPMPPAS-----PFGHGGNHP--MMG---GPQQM---ERIDQGFRRH 228

Zfish    62 TPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIP 126
            ..|.:.|::|:||||||||...||.||.|||:||||||||||.|||.||||||||||||||||||
  Fly   229 NSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRYTIGRTLIP 293

Zfish   127 RYFRSVFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQNGKPMFTQVCVEGRLYLEFMFDD 191
            |:|||::|||.::||:.|||.||||||..::|||||||::||:|||.||:||.:.||.||||:||
  Fly   294 RFFRSIYEGGVSDLYFQLKHAKESFHNTSITLDCDQCTVITQHGKPFFTKVCADARLILEFMYDD 358

Zfish   192 MMRIKTWHFSIRQHRELIPRSILAMH-AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQE 255
            .||||:||.:|:.||||||||::... ..||.:|||::|||||.|::||||||||||||||||||
  Fly   359 YMRIKSWHMTIKGHRELIPRSVIGTSLPPDPMLLDQITKNITRAGITNSTLNYLRLCVILEPMQE 423

Zfish   256 LMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPA--EPARQAPNKRRKRKMSGGSNMSAGGGSNNNS 318
            ||||||.|:|||||||||.||||||||||||.  :|.| .||||||||   |||  :|||:|:|:
  Fly   424 LMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKKDPQR-PPNKRRKRK---GSN--SGGGNNSNT 482

Zfish   319 ---NNKKKSPAN-SFPLSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGI--DDED 377
               .|:|:||:. ||.||||  ||||||||||||||||:|||||||||||||:|..|.:  |:..
  Fly   483 PPVTNQKRSPSGPSFSLSSQ--DVMVVGEPTLMGGEFGEEDERLITRLENTQYDGTNAVEHDNHT 545

Zfish   378 SFN--NSPALGAHSPWN----NKPPSSQEKNENPTSQAS 410
            .|.  :||..|: :||:    ...|:|......|.:.|:
  Fly   546 GFGHADSPISGS-NPWSIDRAGAIPASPGNGAAPQNNAN 583

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldb1bNP_001349250.1 LIM_bind 71..272 CDD:307769 146/201 (73%)
ChiNP_726403.2 LIM_bind 238..440 CDD:280051 146/201 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170579859
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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