DRSC/TRiP Functional Genomics Resources

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Protein Alignment pax6a and Poxm

DIOPT Version :9

Sequence 1:XP_009296153.1 Gene:pax6a / 30567 ZFINID:ZDB-GENE-990415-200 Length:459 Species:Danio rerio
Sequence 2:NP_001036687.1 Gene:Poxm / 40990 FlyBaseID:FBgn0003129 Length:370 Species:Drosophila melanogaster


Alignment Length:428 Identity:145/428 - (33%)
Similarity:181/428 - (42%) Gaps:132/428 - (30%)


- Green bases have known domain annotations that are detailed below.


Zfish    35 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNENVSNGCVSKILG 99
            |||||||||||||||::||.:|||||..|.|||||||.|:              ||:|||||||.
  Fly    13 VNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLR--------------VSHGCVSKILA 63

Zfish   100 RYYETGSIRPRAIGGSKPRVATPEVVGKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSI 164
            ||:|||||.|.|||||||||.||:||..|.:.|:..|.||||||||||||||:|...|:||||||
  Fly    64 RYHETGSILPGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSSI 128

Zfish   165 NRVLRNLASEKQQMGADGMYEKLRMLNGQTGTWGTRPGWYPGTSVPGQPNQDGCQQSDGGGENTN 229
            :|:|||               ||    |..|...|     |||.:       |...|.|||    
  Fly   129 SRILRN---------------KL----GSLGHQHT-----PGTVM-------GSGSSSGGG---- 158

Zfish   230 SISSNGEDSDETQMRLQLKRKLQRNRTSFTQE-QIEALEKEFERTHYPDVFARERLAAKIDLPEA 293
            |:||||.               |.|.||.:.. .:..|.......|:|......:.||       
  Fly   159 SVSSNGG---------------QNNGTSASNNINLSNLGNPGGGPHHPHHHHHHQSAA------- 201

Zfish   294 RIQVWFSNRRAKWRREEKLRNQRRQASNSSSHIPISSSFSTSVYQPIPQPTTPVSFTSGSMLGRS 358
                                     |:.|:.|:...:.....:|..|.||.:..:..|       
  Fly   202 -------------------------AAASAHHVHAHAHAHAHLYNSIYQPYSAAAAYS------- 234

Zfish   359 DTALTNTYSALPPMPSFTMANNLPMQPSQTSSYSCML-----PTSPSVNGRSYDTYTPPHMQAHM 418
                ..|....|..|...........|.|..|.:...     |:|.||:          .:.||.
  Fly   235 ----MKTPCGSPSPPQGAGGQGSVPHPHQLRSVAAAAAAAHWPSSHSVS----------DILAHH 285

Zfish   419 NSQSMAASGTTSTGL---------ISPGVSVPVQVPGS 447
            .:.::.||.....|:         :||....|..|.|:
  Fly   286 QAVALRASCQVGVGVGGMGGMGSTVSPLPMTPSPVAGT 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pax6aXP_009296153.1 PAX 31..169 CDD:128645 87/133 (65%)
Homeobox 255..307 CDD:306543 7/52 (13%)
Retinal 341..>459 CDD:330657 23/121 (19%)
PoxmNP_001036687.1 PAX 10..133 CDD:128645 87/133 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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