DRSC/TRiP Functional Genomics Resources

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Protein Alignment pax9 and Poxm

DIOPT Version :9

Sequence 1:NP_571373.1 Gene:pax9 / 30558 ZFINID:ZDB-GENE-980526-399 Length:343 Species:Danio rerio
Sequence 2:NP_001036687.1 Gene:Poxm / 40990 FlyBaseID:FBgn0003129 Length:370 Species:Drosophila melanogaster


Alignment Length:396 Identity:163/396 - (41%)
Similarity:199/396 - (50%) Gaps:131/396 - (33%)


- Green bases have known domain annotations that are detailed below.


Zfish     3 PAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSIL 67
            |.:|||||||||||||||||||.|:||||||:||||||||||||||||||||||||||:||||||
  Fly     8 PQYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 72

Zfish    68 PGAIGGSKPRVTTPNVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKFNLPSVSSISRILRNKIG 132
            ||||||||||||||.||.:||..|||||||||||||||||::|:|||.|:|||||||||||||:|
  Fly    73 PGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSSISRILRNKLG 137

Zfish   133 NL-------------------------SQQNQYESSKQAS-----HPQPQPTIPYN--------- 158
            :|                         .|.|...:|...:     :|...|..|::         
  Fly   138 SLGHQHTPGTVMGSGSSSGGGSVSSNGGQNNGTSASNNINLSNLGNPGGGPHHPHHHHHHQSAAA 202

Zfish   159 ---------------HLYS--YPTPIAAAGTKVPTPPGMPTLP----GHMAM---HRI------- 192
                           |||:  |....|||...:.||.|.|:.|    |..::   |::       
  Fly   203 AASAHHVHAHAHAHAHLYNSIYQPYSAAAAYSMKTPCGSPSPPQGAGGQGSVPHPHQLRSVAAAA 267

Zfish   193 ----WPSSHSVTDIL------GIRSITE------------QQISDNPSFPSAKLEEWRAINRSNF 235
                |||||||:|||      .:|:..:            ..:|..|..||....          
  Fly   268 AAAHWPSSHSVSDILAHHQAVALRASCQVGVGVGGMGGMGSTVSPLPMTPSPVAG---------- 322

Zfish   236 SPANSPLVN-----GVDKPHLEPEAKYNQTPNGLPTVNSYVTAPSIHHYHPPTQVSPYMGYSGTT 295
            :....||::     |...|:    ..|....||           .:||:|         .:.|..
  Fly   323 TAGGQPLLDCEGGAGQQSPY----NYYMYFQNG-----------GMHHHH---------HHGGMM 363

Zfish   296 SAYVTG 301
            :|..||
  Fly   364 AAGATG 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pax9NP_571373.1 PAX 6..131 CDD:238076 110/124 (89%)
PoxmNP_001036687.1 PAX 10..133 CDD:128645 107/122 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 224 1.000 Domainoid score I2485
eggNOG 1 0.900 - - E1_KOG3517
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1339212at2759
OrthoFinder 1 1.000 - - FOG0003351
OrthoInspector 1 1.000 - - otm24483
orthoMCL 1 0.900 - - OOG6_106145
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3849
SonicParanoid 1 1.000 - - X2237
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.810

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