DRSC/TRiP Functional Genomics Resources

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Protein Alignment sox17 and Sox100B

DIOPT Version :9

Sequence 1:NP_571362.2 Gene:sox17 / 30544 ZFINID:ZDB-GENE-991213-1 Length:413 Species:Danio rerio
Sequence 2:NP_651839.1 Gene:Sox100B / 45039 FlyBaseID:FBgn0024288 Length:529 Species:Drosophila melanogaster


Alignment Length:456 Identity:119/456 - (26%)
Similarity:173/456 - (37%) Gaps:145/456 - (31%)


- Green bases have known domain annotations that are detailed below.


Zfish    48 KCSAAGPGRGKSEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPMVDKRPF 112
            :.||..|...|.| .|:||||||||||:..|:.:::|.|.|.|:||||.|||.||.|...||:||
  Fly    63 QASAKAPTDRKKE-HIKRPMNAFMVWAQAARRVMSKQYPHLQNSELSKSLGKLWKNLKDSDKKPF 126

Zfish   113 VEEAERLRVKHMQDHPNYKYRPRRRKQVKRNKRLEPSFP-----LPGMCDAKMTLCTEGMSAGYS 172
            :|.||:||:.|.|:||:|||:|||:|     .|:.||..     .||   .:|||     ||...
  Fly   127 MEFAEKLRMTHKQEHPDYKYQPRRKK-----ARVLPSQQSGEGGSPG---PEMTL-----SATMG 178

Zfish   173 GAGLPQYCENH---------------TLFESYSLPTPDPSPMDAGTTEFF---------AQLQDQ 213
            .:|.|:...::               :...:.|......:..|..:.|.|         |.|.:|
  Fly   179 SSGKPRSSNSNGQRRAGKGNAAADLGSCASTISHANVGSNSSDVFSNEAFMKSLNSACAASLMEQ 243

Zfish   214 SAFSYHHQQEHHFQEQTNILNDTHCHGNTQTLKSRQS-------HSIAYSNINTNTNSN------ 265
            |..            :|.:  |:.|    .|..|..|       :::|.||...:..:|      
  Fly   244 SLI------------ETGL--DSPC----STASSMSSLTPPATPYNVAPSNAKASAANNPSLLLR 290

Zfish   266 -LHAPI-NA---------------QLSSINLQQVFHENANPQISHHPG------THLNIFNRSPS 307
             |..|: ||               .:..:|.|   .::|..|.....|      ..|...|....
  Fly   291 QLSEPVANAGDGYGVLLEAGREYVAIGEVNYQ---GQSAGVQSGAEGGGAGQEMDFLENINGYGG 352

Zfish   308 SSSHHAMTPAYLNCPSTLDTFYNSSSQMKELSHCVSSHTHKQQSI--AEAQSQASTATHSSGQMV 370
            .:......|||              |......|..:....:||::  :||.:....|.....:.:
  Fly   353 YTGSRVSYPAY--------------SYPANGGHFATEEQQQQQALQASEALNYKPAAADIDPKEI 403

Zfish   371 DEVEFEHCLSFGVP-------------------SAPLPGSDLISTVLSDASS----AVYY--CGY 410
            |:...:..|    |                   |.||..|..:|:..|.|||    |.||  .||
  Fly   404 DQYFMDQML----PMTQHHHPHHTHPLHHPLHHSPPLNSSASLSSACSSASSQQPVAEYYEHLGY 464

Zfish   411 N 411
            :
  Fly   465 S 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sox17NP_571362.2 SOX-TCF_HMG-box 62..133 CDD:238684 41/70 (59%)
Sox_C_TAD 186..411 CDD:288887 55/296 (19%)
Sox100BNP_651839.1 SOX-TCF_HMG-box 76..146 CDD:238684 40/69 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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