DRSC/TRiP Functional Genomics Resources

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Protein Alignment sox17 and Sox15

DIOPT Version :9

Sequence 1:NP_571362.2 Gene:sox17 / 30544 ZFINID:ZDB-GENE-991213-1 Length:413 Species:Danio rerio
Sequence 2:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster


Alignment Length:544 Identity:152/544 - (27%)
Similarity:207/544 - (38%) Gaps:185/544 - (34%)


- Green bases have known domain annotations that are detailed below.


Zfish     1 MSSPDAGYSSDDPSQTSSCSS-----------------VMMPGMGQCPWVDPLSPL-SDSKSKHE 47
            :|.|.||.......|...|:|                 :..|   .|.:::...|| :|.|.:  
  Fly   142 LSHPHAGMVGGGTGQMEDCTSHSPIEAASMWSYDYKGDLCAP---NCGYLERHKPLPADLKYR-- 201

Zfish    48 KCSAAGPG----RGKSEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPMVD 108
                  ||    :...|.||||||||||||||.|||:||.:|||||||:|||||||.|::|...|
  Fly   202 ------PGGTQSKSAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQD 260

Zfish   109 KRPFVEEAERLRVKHMQDHPNYKYRPRRRKQVK------RNKRLEPSFPLPGMCDAKMT--LCTE 165
            :||:|||||||||.||.:|||||||||||||.|      ..|....|.|.||...:|..  |.|.
  Fly   261 RRPYVEEAERLRVIHMTEHPNYKYRPRRRKQSKLRAMQPGGKEQSESSPNPGTGGSKSNPKLATP 325

Zfish   166 GMSAGYSGAGLP---QYC----ENH------TLFESYSLPTPDPSPMD----AGTTEFFAQL--- 210
            .::...|....|   ..|    :||      .|:|....||..||.:|    |.:||....|   
  Fly   326 PLATASSSYTTPTDESTCNSTNQNHGQSTPGGLYEQPLKPTYSPSSVDCYSNADSTEQIESLAAN 390

Zfish   211 -------------------------------------QDQSAFSYHHQQ--EHHFQEQTNILNDT 236
                                                 |::.|.|....:  :...|.|..|...|
  Fly   391 CPPALLNESSPTGGGYDNSLLLKKLTKPSPSRAAKSRQEKLAKSEEKNKGSQSQGQSQQGIYAAT 455

Zfish   237 H-----------CHGNTQTLKSR----QSHSIA---YSNINTNTNSNLHAPINAQLSSINLQQVF 283
            :           ..|...|..:|    ..||:.   |..::.:.:.|..:..|: :|:  |||  
  Fly   456 YPLAPTSVAVVAARGMYVTCNNRGLLDHGHSVKGTFYPPVSVSEDDNSTSMRNS-ISA--LQQ-- 515

Zfish   284 HENANPQISHHPGTHLNIFNRSPSSS---------SHHAMTPAYLNCPSTLDTFYNSSS------ 333
                          |.|:...:||||         |.:.::.|. || ..|....|..|      
  Fly   516 --------------HCNVVTSTPSSSGGTMPTSEMSSYTVSMAD-NC-GNLRLSMNELSGNEYLP 564

Zfish   334 ---------------QMKELSHCVSSHTHKQQSIAEAQSQASTATHSSGQMVDEVEFEHCLSFGV 383
                           |..::.:..|:..||:.:...|..|.......:.|..|:.|.|     ..
  Fly   565 SANAYGMQYEDFLRYQSNDMDYSTSAVEHKETTSDSASGQKCLKYPDTNQNYDDYEAE-----AY 624

Zfish   384 PSAPLPGSDLISTVLSDASSAVYY 407
            .:|.||           |::|.||
  Fly   625 SNAMLP-----------ATAASYY 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sox17NP_571362.2 SOX-TCF_HMG-box 62..133 CDD:238684 54/70 (77%)
Sox_C_TAD 186..411 CDD:288887 59/316 (19%)
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 54/70 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 118 1.000 Domainoid score I5813
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 1 1.000 - - otm24659
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R685
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
77.040

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