DRSC/TRiP Functional Genomics Resources

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Protein Alignment pax3a and ey

DIOPT Version :9

Sequence 1:NP_571352.1 Gene:pax3a / 30532 ZFINID:ZDB-GENE-980526-52 Length:509 Species:Danio rerio
Sequence 2:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster


Alignment Length:751 Identity:211/751 - (28%)
Similarity:280/751 - (37%) Gaps:295/751 - (39%)


- Green bases have known domain annotations that are detailed below.


Zfish    38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIG 102
            ||||||||:.|||||:..|.||||:||.|.|||.|||.|:||:|||||||.||.|||||||.|||
  Fly   101 VNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRAIG 165

Zfish   103 GSKPKQSTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDGICDRNNVPSVSSISRMLR-------- 159
            ||||:.:|. :|..||.:||||.|.:|:|||||:||::.:|..:|:||||||:|:||        
  Fly   166 GSKPRVATA-EVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQKEQ 229

Zfish   160 ---------------------CKFGGN------------------------------------GD 167
                                 ...|||                                    |:
  Fly   230 QSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGGASNSGE 294

Zfish   168 EDEDDDEVEKREIEENERRA------------------KHSIDGILGDRSSH------------- 201
            ..|.:...||..:...:..|                  .|     ||.||||             
  Fly   295 GSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNH-----LGTRSSHPQLVHGNHQALQQ 354

Zfish   202 ----------------------------------------------------------------- 201
                                                                             
  Fly   355 HQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNC 419

Zfish   202 -----------------SDE----------------GSDVDSEPGLPLKRKQRRSRTTFTAEQLE 233
                             |||                |:..|.:..|.||||.:|:||:||.:|::
  Fly   420 PVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQID 484

Zfish   234 ELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG-ANQLMAFNHLIPGGFPP 297
            .||:.||||||||::.||.||.:..|.|||:|||||||||:||::.. .||....|..   |...
  Fly   485 SLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNST---GASA 546

Zfish   298 SAMSSLQPYQLADSPYPPS-------------SISQVS--EQPSTV----------------HRP 331
            ::.|:.....|.|||...|             |:|.::  ..|||:                ..|
  Fly   547 TSSSTSATASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESP 611

Zfish   332 QPLPP-----TSVHQSG--------------LGSG----------PGAQEGSSAYCLSSGRHGFS 367
            .|:|.     ||.:.:|              ||.|          .|..:|.:.....|.|..|:
  Fly   612 TPIPHIRPSCTSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALVPAISPRLNFN 676

Zfish   368 GYSDGYVAAPGHANPVNPSISNGLPSQVMGLLNPGAVPHQPQSDFALSPLTGGLEPSTGMPASCH 432
            ..|.|.:.:..|...::.|.|.|..:.:....:....|..|.|..   |..|.|.||:..|  ||
  Fly   677 SGSFGAMYSNMHHTALSMSDSYGAVTPIPSFNHSAVGPLAPPSPI---PQQGDLTPSSLYP--CH 736

Zfish   433 SSQR--------LEALPGLPSMPA---LPSSQS-YCPSSYSSPGYSV-------------DHVAS 472
            .:.|        ...:||....||   |.|.|| ...:|.|..||.|             ...|.
  Fly   737 MTLRPPPMAPAHHHIVPGDGGRPAGVGLGSGQSANLGASCSGSGYEVLSAYALPPPPMASSSAAD 801

Zfish   473 YQYSQYGQSKVNTSTVTTVERLSRVYPLKRAS-FGL 507
            ..:|....:..|.:...|:.:.|...|...|| ||:
  Fly   802 SSFSAASSASANVTPHHTIAQESCPSPCSSASHFGV 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pax3aNP_571352.1 PAX 34..159 CDD:128645 79/120 (66%)
Homeobox 223..276 CDD:278475 32/52 (62%)
Pax7 350..394 CDD:289156 10/43 (23%)
eyNP_001014693.1 PAX 98..221 CDD:128645 79/120 (66%)
Homeobox 475..527 CDD:278475 32/51 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

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